BAC Information

Click to search

BAC

Clone NameMSMg01-148P16
Chromosome18 (Build37)
Map Location 56,499,714 - 56,500,170
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
Downstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148P16.T7 (MSMg01no148_p16.b1)MSMg01-148P16.TJ (MSMg01no148_p16.g1)
ACCAG351825AG351826
length723708
length of high quality
(start - end)
461 (74 - 534)588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no148_p16.b1 PHD_FILE: MSMg01no148_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:04 2005CHROMAT_FILE: MSMg01no148_p16.g1 PHD_FILE: MSMg01no148_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTAAATTTGCGGCGCTAAACGACTCCTATTTTTCAGAGATCCGCGGAA
TTCACACCTATTATCGTAAACCTAGTCCAAAGCCAATAGATGGAGAGATT
ATATGTCTTAGAAGAGATGCTACCACTGTTGTTTTGATAAATGTATATAA
TACTCCCATTAAACTACATGGGGTAAAACCTTATGGAATGGTGTCTTTGG
GGCACAACACAGCGGTAGCACTCTTGAACCCTAATTTCAAGTTGTATCTA
CCTTCATAAGAATGGTCCTGTCATAGAGTAGGAATAGAGCTCTTGAGGCC
CCCCTCCCACCTCATCCCTATTGTAGTTCTAGGCAGTTCAGAGCTGTGAA
GGAAGAAAGTTTTTTTCAATGGTGCAGCCACTAGAAAGATGCCCATGTCC
GTTTTCATCCATGCGCCCCCCCCCAACCTTAATGAAACAAATTAGGTCAC
AAACACATACAAAAAGGAAGTAGGACAGAGTCTAACCAGGGAGAGGAAGG
TAGTGGTAAGAGTGGGAAAGGATAAGAGAGGTTGCCCATATCCTCCCCCA
TTTACTTATCTCCCTACCCCTTTCCCTCTTGTTACATGACCCCTCCCCTT
ACGCTCTCTTTACCTACCTGTTCTTAACTCTTTTCACACCTTTCCTCCCA
CTTCCCCACCCCTTTTACTTATTCACCTCTTACCTCCTTCTACACATTTT
TTCTTCCCCCCAATTTTTTCTCG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAACTAGATGTTCCTTGATGG
AATGATTCTTAAACAATTAAAAATTGAGGCATGGGGCACAGCCCAGCACA
GCCCAGCACAGCCCAGCACAGCACATCACAGCACAGCACACAGCACAGCA
CAGCACAGCACAGCACAGCACAATCCTAATGGTCCAGGCACACACTGTGT
GTTCTCATCTTGGAAACAATGTAATAACTGCACAATGGTAGTTCCAGATT
AATGCTTGACTTGCAAAGAAAGTTTGAAGAAATTAGAAAATGAAATAGAG
CCAACACTGGAACCCCAAGAAAAGAAAAAACTATTGAAATTATGAAATAA
GTTTTGCACAATATTTCACACCCCCCCCTGGATAAGCAAGTATAGAATAT
GTAAAATCTTATCCTAGTAAAACTAAGTCAAACACTGGGACTCTTAGGAG
AGTCATTGTGTGCAATGTGCAGAAGCAGAAAGCTAGCGGAACTACTGAGT
TAAGGGTTAACTTGATTCTTTCTGGCCACTGCCTGGCAGCTTTGCCCATG
TCATTTATCATTAGAGTTTCACAAGAAAATGCAAGTAGCTGGCCTCAGTG
CTCTGAGCCCTGAAGCATAATAAGTTAAAGTTTAAATAGTGATAAGTTTG
CACGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_p16.b1 MSMg01no148_p16.b1 CHROMAT_FILE:
MSMg01no148_p16.b1 PHD_FILE: MSMg01no148_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:04 2005
         (461 letters)



>mm_chr18_56499514_56500374
          Length = 861

 Score =  766 bits (396), Expect = 0.0
 Identities = 442/464 (95%), Gaps = 13/464 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccaaagccaatagatggagagattatatgtcttagaagagatgctaccactgttgtt 60
           |||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 201 agtccaaagccaatggatagagagagtatatgtcttacaagagatgctaccactgttgtt 260

                                                                       
Query: 61  ttgataaatgtatataatactcccattaaactacatggggtaaaaccttatggaatggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgataaatgtatataatactcccattaaactacatggggtaaaaccttatggaatggtg 320

                                                                       
Query: 121 tctttggggcacaacacagcggtagcactcttgaaccctaatttcaagttgtatctacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tctttggggcacaacacagcggtagcactcttgaaccctaatttcaagttgtaactacct 380

                                                                       
Query: 181 tcataagaatggtcctgtcatagagtaggaatagagctcttgaggcccccctcccacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataagaatggtcctgtcatagagtaggaatagagctcttgaggcccccctcccacctc 440

                                                                       
Query: 241 atccctattgtagttctaggcagttcagagctgtgaaggaagaaagtttttttcaatggt 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccctacag-agttctaggcagttcagagctgtgaaggaagaaagtttttttcaatggt 499

                                                                       
Query: 301 gcagccactagaaagatgcccatgtccgttttcatccatgcgcc------cccccccaac 354
           ||||||||||||||||||||||||||||||||||||||||||||      |      |||
Sbjct: 500 gcagccactagaaagatgcccatgtccgttttcatccatgcgcctatgagc------aac 553

                                                                       
Query: 355 cttaatgaaacaaattaggtcacaaacacatacaaaaaggaagtaggacagagtctaacc 414
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cttaaggaaacaaattaggtcacaaacacatacaaaaaggaagtaggacagagtctaacc 613

                                                       
Query: 415 agggagaggaaggtagtggtaagagtgggaaaggataagagagg 458
           ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agggaaaggaaggtagtggtaagagtgggaaaggataagagagg 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)