BAC Information

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BAC

Clone NameMSMg01-149A15
Chromosome18 (Build37)
Map Location 40,887,294 - 40,887,535
singlet/doubletsinglet
Overlap genenone
Upstream genePabpc2, LOC100041939, Yipf5, Kctd16, EG225416
Downstream geneLOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A15.T7 (MSMg01no149_a15.b1)MSMg01-149A15.TJ (MSMg01no149_a15.g1)
ACCAG351869AG351870
length713713
length of high quality
(start - end)
240 (76 - 315)640 (74 - 713)
definitionCHROMAT_FILE: MSMg01no149_a15.b1 PHD_FILE: MSMg01no149_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:09 2005CHROMAT_FILE: MSMg01no149_a15.g1 PHD_FILE: MSMg01no149_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCTATAATTGCGGCGCTAAACGACTCCTAAATTCGGAGGTGGGCGG
AATTCTCTTGTATTTCGAAACATTACATTTGCTGGAGCAGGTGTGGGTAT
TAATTCCAAATGTGGCCTTGGCTGTCATAGAAACCTGGATTTGACTCCAG
AACTGGTAACTAACAAGCTGCCTGCATTGGAGAAATTAAAGAAATTTTCT
AGACTATTTATTTACTTGGGAGTTGAAGGTTATGATAGTGTTTATTGTGT
ATTGTATATAGGACACTTAGTAAGTGTATGTGCTCAGTTAGCTAATACTC
CTAGTGTCCCTGTGACTTAATCAATTTCTTATAAGCAGGCATCAATATAG
CATGCTTAACTAAGATCCCTTACCTAAAACATTTTTAGGAGCAGCAATGT
GAGAAAGATGAGTAGACCTTGTTCTCCCTGTATATTTTTCTCCAAAGCAT
TGCATGTATTTGAAAGAGGAAGCAAAAGCGTGAAGAAGAGAGGAATTCCA
TACTAATAAGAAATATAGATGAAGCCATACTAGGCTTTGAGACACAAGTA
ACATTTTTTAAGATTATTAAGAAATTTAGATTTTTATGTGAAACCTCTAA
ATTTTAAAATATTGGCTCTACATTTTTATATTTCCTTTTTCAAGACCATG
CCTGGACAATAACACGTATCTGAGATCTCAATCCTCGATCTAGGTAACCT
AGAGACTAAAAGT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCTGAAAATAAGGCCCATACCTAAACATGATAAGAAC
AATCTACAGCAAACCAGGAGCCAACATCAAAATAAATGGAGAGAAGCTGG
AAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCC
TAACTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCCACAACA
AAAGGAGATCAAGTGGATACAAATTGGAAAGGAGGAAGTCAAAATATAAC
TTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACC
AGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAA
AATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGG
CTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAAT
ATAAAATATCTCGGAGTGACTCTAACTAAGTAAGTGAAAGATCTGTATGA
TAAAAACTTCAAGTCTCTGAAGAAAGGATTAAAGAAGATCTCAGAAGATG
GAAAGGTCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGA
CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT
CCAACTCAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a15.b1 MSMg01no149_a15.b1 CHROMAT_FILE:
MSMg01no149_a15.b1 PHD_FILE: MSMg01no149_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:09 2005
         (240 letters)



>mm_chr18_40887094_40887735
          Length = 642

 Score =  418 bits (216), Expect = e-121
 Identities = 235/242 (97%), Gaps = 2/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgctggagcaggtgtgggtattaattccaaatgtggccttggctgtcatagaaacc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catttgctggagcaggtgtgggtattaattccaaatgtggccttgggtgtcatagaaacc 260

                                                                       
Query: 61  tggatttgactccagaactggtaactaacaagctgcctgcattggagaaattaaagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatttgactccagaactggtaactaacaagctgcctgcattggagaaattaaagaaat 320

                                                                       
Query: 121 tttctagact--atttatttacttgggagttgaaggttatgatagtgtttattgtgtatt 178
           ||||||||||  ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 321 tttctagactgtatttatttacttgggagctgaaggttatgatagtgtttattatgcatt 380

                                                                       
Query: 179 gtatataggacacttagtaagtgtatgtgctcagttagctaatactcctagtgtccctgt 238
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatataggacacttagtaagtatatgtgctcagttagctaatactcctagtgtccctgt 440

             
Query: 239 ga 240
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 642
Length adjustment: 9
Effective length of query: 231
Effective length of database: 633
Effective search space:   146223
Effective search space used:   146223
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)