BAC Information

Click to search

BAC

Clone NameMSMg01-149B21
Chromosome18 (Build37)
Map Location 60,200,204 - 60,200,715
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149B21.T7 (MSMg01no149_b21.b1)MSMg01-149B21.TJ (MSMg01no149_b21.g1)
ACCAG351926AG351927
length702703
length of high quality
(start - end)
659 (44 - 702)512 (72 - 583)
definitionCHROMAT_FILE: MSMg01no149_b21.b1 PHD_FILE: MSMg01no149_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:16 2005CHROMAT_FILE: MSMg01no149_b21.g1 PHD_FILE: MSMg01no149_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTATAATTGTATCAGTAATTATTAAGATCTTTTATAGTAGGACTGCT
ATTAGGTCCTTTTCTGATAATCAAAACTGCAATGAGAACTCTGTCAGTCT
CCCATGTGTCACCAGTTTATTGCTCTTAGATAGTAACCAGACTATTTTGT
ACTCAGAGCATATTTCAAGAAGTTGTAAAACAATTAGCCAAAGGTCATAA
ACTGAGAATTAGCAATTTATTATAGGTGCTAGGACAGAAGATAAAGTATT
GACTGGGTTTATCTATACAAAACTTCACTAATAACTTAGTTATGTTTTTT
GACTTTCAATGAAGCTGTGGAACTGTGACAGGTGATGGATGTTTAGCCAG
ATAATCACTCCTAATGGATATGCATGCAAACATTCTCTGTTGTAAACTTC
TATTTCAATTTATGGTTTGATTTTATGTGTGAACTTGTGGTGAACTTTTT
AACATGTGATCATGTATTCTGAAAGATGTTTTAAGTGCTGAGGACAAAGA
GAAGAACTGAGCTGAAAGGAACTGAGTTGAGAGGAACTGAGCTGAGAGGC
ACTAAGTTTTTACACAGAACAGTTTTTAGACAGAACTGAACTCTATAGGC
ATAGCTTAGGGAGAAATGGCATTGAGAGTAAGAGCATTGTTGTGACTTCA
GA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACCTATAAGTAGTCCCAGATTGGTACCT
GTGGTGTGGTGGGTGATACCTAGCAGGTAGGGAAGAGGACTGACTTTGGA
GTTTCTTAAGCATAATTTCAAGTCTGGTTCTATGAAGTGGGGAAGAAGTA
GAAATGATGGTATAATGGCTCTGGGCATGGATGACAGTAAGTCCACAGGG
AATGGAGGTGGGCTGGGAGGAGGGGCTGAGGTTGGTCGTCAGAGGTAGAT
TGAAAAGGACTCTGGAGAGTCCAGAGAAGAGGAGAGAAAGGAAGGCACAA
GTAGCCTATCTGGTTTCCTCTAAGTATTGGGGTCCCTGGTAGAAAGCAGT
TCTTCAGGTCTATGAGTACTCCAATTACATGGAGGGATGGCTGAAGGGGA
TGGTGAGGAGTAATTAGGGGGATACTTTGTTTACACCACAAGAACCTATT
CTTTTTTATTGTTACATTAAGAAACTAAAGCAAAGCAAGGATTGGTAGGG
TCATAAAGCTTTGTTTTCATTTTATTTACTTAAAAAGCTTAAACTTTTAA
TTAAAATATAACGACACCTTTTCTCCCTTCTCTTTAAGCTTCTGTCTCCT
TTTTGTTGTTTTAGAAATTTAATTCGCATAGAATTTTTTTATATAAAATG
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_b21.g1 MSMg01no149_b21.g1 CHROMAT_FILE:
MSMg01no149_b21.g1 PHD_FILE: MSMg01no149_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:16 2005
         (512 letters)



>mm_chr18_60200004_60200915
          Length = 912

 Score =  951 bits (492), Expect = 0.0
 Identities = 507/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctataagtagtcccagattggtacctgtggtgtggtgggtgatacctagcaggtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aacctataagtagtcccagattggtacctgtggtgtggtgggtgatacctagcaggtagg 653

                                                                       
Query: 61  gaagaggactgactttggagtttcttaagcataatttcaagtctggttctatgaagtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaagaggactgactttggagtttcttaagcataatttcaagtctggttctatgaagtggg 593

                                                                       
Query: 121 gaagaagtagaaatgatggtataatggctctgggcatggatgacagtaagtccacaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 592 gaagaagtagaaatgatggtataatggctctgggcatggatgacaataagtccacaggga 533

                                                                       
Query: 181 atggaggtgggctgggaggaggggctgaggttggtcgtcagaggtagattgaaaaggact 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 532 atggaggtgggctgggaggaggggctgaggttgatcgtcagaggtagattgaaaaggact 473

                                                                       
Query: 241 ctggagagtccagagaagaggagagaaaggaaggcacaagtagcctatctggtttcctct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 472 ctggagagtccagagtagaggagagaaaggaaggcacaagtagcctatctggtatcctct 413

                                                                       
Query: 301 aagtattggggtccctggtagaaagcagttcttcaggtctatgagtactccaattacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aagtattggggtccctggtagaaagcagttcttcaggtctatgagtactccaattacatg 353

                                                                       
Query: 361 gagggatggctgaaggggatggtgaggagtaattagggggatactttgtttacaccacaa 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 352 gagggatggctgaaggggatggtgaggagtaattagggagatactttgtttacaccacaa 293

                                                                       
Query: 421 gaacctattcttttttattgttacattaagaaactaaagcaaagcaaggattggtagggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaacctattcttttttattgttacattaagaaactaaagcaaagcaaggattggtagggt 233

                                           
Query: 481 cataaagctttgttttcattttatttacttaa 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cataaagctttgttttcattttatttacttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)