BAC Information

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BAC

Clone NameMSMg01-149D02
Chromosome18 (Build37)
Map Location 60,185,588 - 60,185,843
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149D02.T7 (MSMg01no149_d02.b1)MSMg01-149D02.TJ (MSMg01no149_d02.g1)
ACCAG351980AG351981
length702731
length of high quality
(start - end)
631 (47 - 677)259 (77 - 335)
definitionCHROMAT_FILE: MSMg01no149_d02.b1 PHD_FILE: MSMg01no149_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:22 2005CHROMAT_FILE: MSMg01no149_d02.g1 PHD_FILE: MSMg01no149_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGC
GGAATTCTCAGTTTACTTCTATATCCCATTTTTTTTTTGATTAGGTTGTT
TGGTTGTTTGGTGGTTAGCTTGCATTCTTTATATATTTTGGATATTAGCC
CTCTATCGGATATGGGGTTAGTGAAGTTATTTTTCTCCAATCAGTAGGTT
GCCGATTTGTCTTACTGATTATGTCTTGTTCTTTGCCTTACAGAAGCTTT
CCAGTTTCATGAGGTCCCATTTATCAATTCTTAATCTTAGAGTGTGAGCC
ACTGAAGTTCTGTTTAGGAAATCTCCCCCTGTGCCAAGAGTCCAAGGCTC
TTTCCCCCTTTCTCTTCTATTAGATTGAGTGTATCTGGTTTTATGTTGAG
GTCTTTGATCCACTTGATCTTGAGCTTTGTGCAAGGTGACAAATATGGCT
CTATTTTCACTTTTCTACATATAGACAGCCAGTTAGACCAGCACCATTTA
TTGAAGATACTTTCTTTTTTCCATTGTATATTTTTGGCTTCTTGGTCAAA
TATCATGTGTCGGTAAGTTTTTTTTTTTCCTTCAATTCTATTCCATTGAT
CAACCTGTCTGTCTCTGTACCAATACCATGAAGTTTTTATCACTATTGCT
CTGAGGTAGAGCTTGAGGTCAGGGATAGTGATTCCACCATCCATTCTTTT
AC
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACCAAATACAGGTTTTTTG
TTTGTTTGTTTTTTTTTTTTTTTGAACTGAAGAAAACCATAACTGGTTTG
AAAGACCCAGTAAGGGACTTTAATAGCAAACTAGATGGTACAGAAGAGAT
GGCTTTACAATCATCTTCTAAGAGGATGAAAAATAAGAAAGACTGAACAA
AGAGGATAAAGAGGGAAGAAAGTCTAAGAAATTATGAGATACTATGGTGT
GTCTGTATGTGGGGGTAGGGGGGAGTGTATGTGTACGCGTCCTCCTGACC
GTGTGCGACCGCCCGCCCCTCCCCTTTTCTTCCCCCCTATAGCCTACCTC
GTTTTCTCACCCCTCCTCTCCCTTACTCTCTCCCCTCATTACCCCCCTCT
CTCTCAATTTCCATCGCGTTCCGCCTTCCCCCCTTTCCATCCTTTCGCTC
CGTACTTCCCCTCCCTCCCCATTCTTACCCTCCCCATCTTCGTCTCACCT
TTTCCTTCCCCCCTTTATACCCCCTCTATCCCCCTTACCCCGCACTCTCC
CTTTCCCCTCCCCTCACCCTTACCCTACTCTTTTTCTTTTTCCCCCCCCT
CCTCTCACGTTTCTCCCGCTCTTTCTTTTTCCCCCTCCTTTCTTCCCCAT
TTTTTTTCCCCACTACGTACCCCCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_d02.g1 MSMg01no149_d02.g1 CHROMAT_FILE:
MSMg01no149_d02.g1 PHD_FILE: MSMg01no149_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:22 2005
         (259 letters)



>mm_chr18_60185388_60186045
          Length = 658

 Score =  429 bits (222), Expect = e-125
 Identities = 250/260 (96%), Gaps = 7/260 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaccaaatacag--gttttttgtttgtttgttttttttttttttt-gaactgaaga 57
           ||||||||||||||||  ||||||| ||| ||| ||||||||||||||| ||||||||||
Sbjct: 201 caggcaccaaatacagttgtttttt-ttt-ttt-tttttttttttttttggaactgaaga 257

                                                                       
Query: 58  aaaccataactggtttgaaagacccagtaagggactttaatagcaaactagatggtacag 117
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaccataactgggttgaaagacccagtaagggactttaatagcaaactagatggtacag 317

                                                                       
Query: 118 aagagatggctttacaatcatcttctaagaggatgaaaaataagaaagactgaacaaaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagagatggctttacaatcatcttctaagaggatgaaaaataagaaagactgaacaaaga 377

                                                                       
Query: 178 ggataaagagggaagaaagtctaagaaattatgagatactatggtgtgtctgtatgtggg 237
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 378 ggataaagagggaagaaagtctaagaaattatgagatactatagtgtgtctgcatgtggg 437

                               
Query: 238 ggtaggggggagtgtatgtg 257
           ||| ||||||||||||||||
Sbjct: 438 ggt-ggggggagtgtatgtg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 658
Length adjustment: 9
Effective length of query: 250
Effective length of database: 649
Effective search space:   162250
Effective search space used:   162250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)