BAC Information

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BAC

Clone NameMSMg01-150H12
Chromosome18 (Build37)
Map Location 47,071,197 - 47,071,543
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798
Downstream geneGm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150H12.T7 (MSMg01no150_h12.b1)MSMg01-150H12.TJ (MSMg01no150_h12.g1)
ACCAG352901AG352902
length763743
length of high quality
(start - end)
266 (44 - 309)331 (72 - 402)
definitionCHROMAT_FILE: MSMg01no150_h12.b1 PHD_FILE: MSMg01no150_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:02 2005CHROMAT_FILE: MSMg01no150_h12.g1 PHD_FILE: MSMg01no150_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCCGACTTTTATCATGAATGGGTGTTGGATCTTGTCGA
ATGCTTTTTCCGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAATGGATTACGTTGATGGATTTCCGTATTAAACCATCCCT
GCATTCCTGGAATAAAACCTACTTGGCCAGGATGGATGATTGCTTTAATG
TGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCTAT
ATTCATAAGGGAAATTGCTCTGAAGTTCTCTATCTTTGCCGCATCTTTCT
GCGGTTTATTTATCATAGTTTTTGTGTTTTCATTTACTGATTTGCCCCCC
ATTTTCCTTTTCCCCCCCTCTTTTCCGTACTCTTTTTCCGCCCCCCCCCC
AACACATTTTTCTTTCCTTCATTTTTACTATTTTTCCTTTTTACTTTTTA
TTCCCTCTAATTTTTTCTCCCATCAACCTCGCTTCTATCCCCTCATTTCA
CAATTTCTTCTTCATCTATTTTCCTCTCCCTCCCCTACTTCTCCCCTTTT
TTACCCCCCTTCCCCTCTTTCTTATATTTTTTCTCATTTCCTTCCCCCCC
ACCCCCCCTCTTTTTCCAAACTCACCAACATTCTATTTCTCTTTTCCACC
CTCCCTCTTCTCTTTTTTCTCGTATTTTAAATACTTTTTCCTCCATTTTC
TCTTTATCTCTTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGAGATAGCGAGGGGTCTGTTTTACCTT
AAAGATACTTTAGTATTAATGCACAAGAGTCTTAGTTCCACTCGGGAGGC
AGAGGCAGGCGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAAGTGAG
TTCCAGGGCAGCCAAGACTACACAGAGAAACCCTGTCTCGAAAAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAGATTGAGTCTTAGTTCTACTCCT
ACCCTTGAAAGAAATCTCTTTCTCTGGACTAGGGCTTTTGCACCATCTGT
TGGATCTGTTGGACATGTTTATTTTATACATACAAGAGAGAAACGTTGAG
AGCGGAGAGTAGGGCCCCCCCCACGCAAGGCCTCACAATGGTTATTTTTG
TAGTTTTGCTAGGGAGCTGAGGGATGACAACCAATGAGCTAAGGCTATAT
CTTATGAGAGCGGACGCTCAGACGTATTGCTTAACATGACTACACTATTA
GCGTTTGTTCATGTCTCAGATGTGGCAATATTGAAGCTTTTTAAAGCGAG
AGAGCTCAGACATTTGTTGCCCTTTACAATGGCAACCGTCTGGACTACCG
CTATACTAATTGCCGCGGTTGGGTGCCACCATATTTGTTTGTTTCCTCCC
TGCCCGCCCTTTTTTATGTCGCCACTCCCGTGATTCTTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_h12.g1 MSMg01no150_h12.g1 CHROMAT_FILE:
MSMg01no150_h12.g1 PHD_FILE: MSMg01no150_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:02 2005
         (331 letters)



>mm_chr18_47071014_47071743
          Length = 730

 Score =  495 bits (256), Expect = e-144
 Identities = 317/350 (90%), Gaps = 22/350 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 243

                                                                       
Query: 61  ttagttccactcgggaggcagaggcaggcggatttctgagttcgaggctagcctggtcta 120
           ||||||||||| ||||||||||||||||| ||||||||| || ||||| |||||||||||
Sbjct: 244 ttagttccacttgggaggcagaggcaggcagatttctgaatttgaggccagcctggtcta 303

                                                                       
Query: 121 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcgaaaaaccaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 304 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcaaaaaaccaaaa 363

                                                                       
Query: 181 aaaaaaaaaaaaaaaaaaaaaaa-------------------agagattgagtcttagtt 221
           ||||||||||||||| | | | |                   |||||  |||||||||||
Sbjct: 364 aaaaaaaaaaaaaaagagagagagagagagagagagagagagagaga--gagtcttagtt 421

                                                                       
Query: 222 ctactcctacccttgaaagaaatctctttctctggactagggcttttgcaccatctgttg 281
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 422 ctactcctacccttgaaagaaatctctttc-ctggactagggcttttgcaccatctgttg 480

                                                             
Query: 282 gatctgttggacatgtttattttatacatacaagagagaaacgttgagag 331
           ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 gatctgttggacatgtttattttatacatacaagagagaaatgttgagag 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)