BAC Information

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BAC

Clone NameMSMg01-151C14
Chromosome18 (Build37)
Map Location 68,747,557 - 68,747,810
singlet/doubletsinglet
Overlap genenone
Upstream geneCep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C14.T7 (MSMg01no151_c14.b1)MSMg01-151C14.TJ (MSMg01no151_c14.g1)
ACCAG353402AG353403
length703865
length of high quality
(start - end)
254 (70 - 323)---
definitionCHROMAT_FILE: MSMg01no151_c14.b1 PHD_FILE: MSMg01no151_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005CHROMAT_FILE: MSMg01no151_c14.g1 PHD_FILE: MSMg01no151_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTACTGATGTATGTCAATGACAGAACACATT
GGCCTAGGACTCAGAACACCAGGAGCCAAAACATGTAGGGTCTTCTAGAG
AGATTAAAAGAGAATCATCTCTTCTATTTGTACTGTACCTTTAACTTTAA
GAGTTCAGGGTCAAAGAGTCTACTTGGAATTTTATGAACCAAAATCACTT
TCATCTGTAGAAATACAGAGTGAGGAATCCAAGTTATAAAACCAAGATGG
TTACAGTCACATAAGCAGCAAAGCCGTATGAGAAGTGAGATTCTGTCCCA
TCGTTCTTTTCTCATGCTATTAGCTCTGGCTATGGCATGTCCTAGCCCAT
CCGAAATAGGCAGTTTTTATCCCCCCCGCTAGATTGGGAATACAGAAGAG
AATCACAGCTGGAGATAAATATTCAAGTCCTCAATATGGCCCAAGTAACA
TAGAGCCTAGAACTGGCGGAGTTCTAGACTGCAGAAGAGCATGAGGACTT
GAATACTGAGCTACTATCTGCTCAGAAGTTACTTCTGTGCCCAGCGATGC
CGCTCATTGCTTCTAGTCCTTAGAACGAATCCCACCGAAAACACTGCTTG
CCTCATCCACTTTTCCGATGGACCCCCCCAGCACCCAGAATTTTTACTGC
GCC
CCTTCCTCCTTCTCACCCCTTCCCTCCTCTCCCCCCACTTCTCTACGTAT
GAATTGCGCAGGCTGGAGGTCGACTGGACTTCCAATACAGCGCGAACTAT
AGAAGGATCTGCCCAATTCCCTTCTGATGTACAGCAAATTAAATCATGAA
CTTGGCACTCACATGGACTGAACTATAAAATGTTACACTGGGTATAATCC
GCACCCAGGAAGGCGACCACAACATTCTCTCTTATCTGCGGATCTTACGT
CTAACTCCTTACGTTTGAGTTCAGAACCTAAAGTAACCGTACAACCCCCG
AAAGCAGAACGCTCCTGTGGATTGAGAGCTCTCTAGAGACCGCCATCGTA
TCACAGACCTGATATGAATTTCACTGCCCCGAATTGACCACACTCCACCT
CCGCTCCCCCCCCTTACGTCTTTTTCCCCCCTTTTCACCCACCCCTCTCC
TCCCTTCTCTCTTCAAATATCTCCCCCCCCCCCATCTTGGGAACCCTTTT
CTCTCCTTCCCCCCTCTCATTTTTCCACCCCACCTTTTCTTCCCTTCCTT
CCCATCCTCCCTTATTCCCCTTCTTACCCCCTTTTTTTTCTCCCTTCCCT
TCTTTTCCTTTCCCCCCCCTTTCCCACCCCCCTTTCCCCCCCATCTCCCT
TTACCCCTTTACTTTCCCCCCCTACTATTATCCCCTCATATACCTTCTCC
CCCCTTTATATCTCTTTTTTCCCTTCCCCTTTTCTTTTTCCCCTCTTTAT
CCTTTCTCACCCCCTTCCCCCTTTTGTTTCTTCTCTCCCCTTCTTTCCCT
ATCACCCTTCCCCTCACCCCACCTCTCTTTAACCACCCCCCCATATTCCC
CTTTTACCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c14.b1 MSMg01no151_c14.b1 CHROMAT_FILE:
MSMg01no151_c14.b1 PHD_FILE: MSMg01no151_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:54 2005
         (254 letters)



>mm_chr18_68747357_68748010
          Length = 654

 Score =  460 bits (238), Expect = e-134
 Identities = 250/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactgatgtatgtcaatgacagaacacattggcctaggactcagaacaccaggagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttactgatgtatgtcaatgacagaacacattggcctaggactcagaacaccaggagccaa 395

                                                                       
Query: 61  aacatgtagggtcttctagagagattaaaagagaatcatctcttctatttgtactgtacc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aacatgtagggtctactagagagattaaaagagaatcatctcttctatttgtactgtacc 335

                                                                       
Query: 121 tttaactttaagagttcagggtcaaagagtctacttggaattttatgaaccaaaatcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 334 tttaactttaagagttcagggtcaaagagtctacttggaattttatgaacccaaatcact 275

                                                                       
Query: 181 ttcatctgtagaaatacagagtgaggaatccaagttataaaaccaagatggttacagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 274 ttcatctgtagaaatacagagtgaggaatccaagttataaaaccaagatggctatagtca 215

                         
Query: 241 cataagcagcaaag 254
           ||||||||||||||
Sbjct: 214 cataagcagcaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)