Query= MSMg01no151_d05.b1 MSMg01no151_d05.b1 CHROMAT_FILE:
MSMg01no151_d05.b1 PHD_FILE: MSMg01no151_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:57 2005
(669 letters)
>mm_chr18_73276820_73277889
Length = 1070
Score = 1089 bits (563), Expect = 0.0
Identities = 629/667 (94%), Gaps = 32/667 (4%)
Strand = Plus / Minus
Query: 4 ggaattcatatatactcggtaaaaatgtaaaggacttgagagagttacacacaactataa 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggaattcatatatactgggtaaaaatgtaaaggacttgagagagttacacacaactataa 700
Query: 64 aaatccaaattaaaaaaaaaacccataccaaaacaaaacaaccccctcaggacaacaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaatccaaattaaaaaaaaaacccataccaaaacaaaacaaccccctcaggacaacaaag 640
Query: 124 aagtaggcaaacaaagggaaaaacct-agtaaaatgtagataagacatgctttgtgcatt 182
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 639 aagtaggcaaacaaaggcaaaaacctaagtaaaatgtagataagacatgctttgtgcatt 580
Query: 183 aattaaagtaaatgaacttagttcacttagaaaacagatatattcctgagtgcataaaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 579 aattaaagtaaatgaacttagttcacttagaaaacagatatattcctgagtgcat-aaaa 521
Query: 243 attatatggtatgtgagcaaagtaattcaataaaattcagtaataggccagccaccgtac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attatatggtatgtgagcaaagtaattcaataaaattcagtaataggccagccaccgtac 461
Query: 303 act-aagaaggcaaatcccttaggccccaccagctaaccaagcaaagcatccaaacaagg 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 actaaagaaggcaaatcccttaggccccaccagctaaccaagcaaagcatccaaagaagg 401
Query: 362 ccaaacagcatgcaataaataagaaaccaaacaagcaagttatagaagccttagttttaa 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccaaacagcatggaataaataagaaaccaaacaagcaagttatagaagccttagttttaa 341
Query: 422 tactagaaatggtagaatccagaaataaacaaagggttgtgttaggtttatttattctag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tactagaaatggtagaatccagaaataaacaaagggttgtgttaggtttatttattctag 281
Query: 482 agaggacgtcttatgagactttgagagttatgtttatgcacatatgaaataatatgactt 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agaggacgttttatgagactttgagagttatgtttatgcacatatgaaataatatgactt 221
Query: 542 ccaagctcattaggtatcaacaacaaaagctaaaaggaaaagaaacgaaaaaaaaacaaa 601
||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 220 ccaagctcattaggtatcaacaacaaaagctaaaa-----agaaa----------acaaa 176
Query: 602 aacaaaaacaaaaaaacaaaaacaaaaacaaaaagaaaagaaaagaaacatgcagcagaa 661
||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 175 --------caaaaaaacaaaa-c-----caaaaagaaaagaaaagaaacatgcagcagaa 130
Query: 662 ggcttca 668
| |||||
Sbjct: 129 gacttca 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space: 698540
Effective search space used: 698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_d05.g1 MSMg01no151_d05.g1 CHROMAT_FILE:
MSMg01no151_d05.g1 PHD_FILE: MSMg01no151_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:57 2005
(319 letters)
>mm_chr18_73176696_73177410
Length = 715
Score = 478 bits (247), Expect = e-139
Identities = 277/289 (95%), Gaps = 5/289 (1%)
Strand = Plus / Plus
Query: 1 gtagaggattttaagaaggacattattaactcacttaaagaaatacaggagaacactgct 60
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 200 gtagaggattttaagaaggacattaataactcacttaaagaaataaaggataacactgct 259
Query: 61 aaacaggtagaagtacttaaagaggaagcacaaaaat-ccttaaagaattacaggaaaac 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 aaacaggtagaagtacttaaagaggaagcacaaaaatcccttaaagaattacaggaaaac 319
Query: 120 ccatctgtacagggagttccagtgggcattttttttcatgaagcaatataaatataaaat 179
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 ccatccgtacagggagttacagtgggcattttttttcatgaagcaatatagatataaaat 379
Query: 180 acttattttttcagaatttaatggttttcatgaaatcttttggcaactactttccctgtc 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 acttattttttcagaatttaatggttttcatgaaatctgttggcaactactttccctgtc 439
Query: 240 ctcatctaaattctttgtttgtgttttggatgatttttgccttgtatcc 288
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 ctcatctaaattctttgt----gttttggatgatttttgccttgtatcc 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 715
Length adjustment: 9
Effective length of query: 310
Effective length of database: 706
Effective search space: 218860
Effective search space used: 218860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
