BAC Information

Click to search

BAC

Clone NameMSMg01-151I16
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I16.T7 (MSMg01no151_i16.b1)MSMg01-151I16.TJ (MSMg01no151_i16.g1)
ACCAG353678AG353679
length791859
length of high quality
(start - end)
274 (44 - 317)---
definitionCHROMAT_FILE: MSMg01no151_i16.b1 PHD_FILE: MSMg01no151_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:22 2005CHROMAT_FILE: MSMg01no151_i16.g1 PHD_FILE: MSMg01no151_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCA
ACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTA
ATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAG
TACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAA
GCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTT
TTTTTTTTTTTTAGAGACAGGGTTTCTCTGCATAGCCCTGGCTGTCCTGG
CACATTGGATTTTATAACAGACTTTGTGCGTGTGTGTGCCTGTGCGTGTA
TTATTTTTCCCCCCCCCATCTACCTTTTTTCTTCTCACCCCTTTCTCCTT
TTTCCTTCTATTCCTCCTTTTCCTCCCCCCCCTTCCTTACTACCCTCCCT
TTCTTTTCTCCCCTTCTTCCCTCCCCCTCCTTCTTTTTCTCCCTTCCCTC
CTCCCTTCCCCCCCCCCTTCCCCCCTTCGCTTACTTTTTCCCCTTTCTCC
CTCTCCCCCCCTTCTTTTCCCTTCTGTTATCTCCCCTCCCTTCTCCCTTT
CTCTTTTACCCCCCCCCCCCCCTATTTTCTTCCCTCCCCCCCTTTTTTCC
CTCGTCCCCCAAGTCTCTCTTTCTCCCCTTTTCTCCCATTTTCTCTCCTC
GCCCTATCCCTAACCTATTTATTCCTTCCCCTCCTCTCCCN
CTTTCCCCCCCCCCCCACCTTCCCCCTTTTTCCCCAACTTCCTCTCCCCA
TGATATGTGTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGACACCATGGAACGCGTGTCGGCAA
AGCGAGTTCCAGAACAGTCAGGGTTATAGGGAGAAACCCTGTCTCGAAAA
AAACACCAAATACATAACATAAAATAAAATACAATACGAAATAGAAATAC
CCAAGAATTACAAACACGATTACCGAAATAACACATAAGCCCATCTAGAT
TGCAGGTTACCGCAATCACAGTAGAAATATCAAACACACACACACACACA
CACACATACACACATGCACTCACATTTTGCCATAAAATTCTTCGCGCTAG
TACCGTCCAGTCCTACACCGATAAACCTTGTCCCCGCCATAACCAAACCA
AACTATCTTCCTCTTATATTAATTATCCCCCCGTGCCTTTCATGCATCCA
AACTTCCATAGTCCCATACCCCTTACACTATTCCCTACCGTTTTGAACAA
TTCTTTACTTTCCTCCCTCATCCCCCTCCTTCCCTTCCTTTTTTTCCCCT
TCCCTACTTGTCTTACCCCCCCCATTCTCTTCCCCCTTCCCCCCCCCTCC
TCTTCCTTCCATCCATTCCCCTCCTTATCTTCCCTCTATTTTACTCCTCC
CCCCTTTCCTTCCCTTTTCTCCCCTCCCTTCTCTTTTCCCCCCTCTTTCC
TTTTATCTCTTCTCCCCCTCTCATTTCTCCAACCTCACCTTTCCCTTTCG
CCTTTCACCCCTCCACCCTTCTCCTCTCCACCCCCCAAATTTTCCACTTC
AACCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i16.b1 MSMg01no151_i16.b1 CHROMAT_FILE:
MSMg01no151_i16.b1 PHD_FILE: MSMg01no151_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:22 2005
         (274 letters)



>mm_chr18_40467472_40468144
          Length = 673

 Score =  377 bits (195), Expect = e-109
 Identities = 237/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space:   175960
Effective search space used:   175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)