Query= MSMg01no154_d05.b1 MSMg01no154_d05.b1 CHROMAT_FILE:
MSMg01no154_d05.b1 PHD_FILE: MSMg01no154_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:46 2005
(539 letters)
>mm_chr18_50126806_50127741
Length = 936
Score = 584 bits (302), Expect = e-171
Identities = 331/344 (96%), Gaps = 8/344 (2%)
Strand = Plus / Minus
Query: 199 ccttctctctgttttgtccaattccaatgtgttcatttttaaattttatattaccccata 258
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 936 ccttctctctgttttgtccaattccaatgtgttcattttaaaattttatattatcccata 877
Query: 259 attgcttagaatcctgtgttttctacaggagacagaaagggtggatcagaaaggaggtgg 318
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 876 attgcttagaatcctgtgttttctacaggagacagaaaggatggatcagataggaggtgg 817
Query: 319 gaggaactatgaaaagcagagagaggggaaactaagcaggacacattatgcgaaaaccaa 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaggaactatgaaaagcagagagaggggaaactaagcaggacacattatgcgaaaaccaa 757
Query: 379 ctctactttcaataaaagg---aaaaaaacccccacctgtttaaaaactcttacccttaa 435
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 756 ctctactttcaataaaaggaaaaaaaaaa--cccacctgtttaaaaactcttacccttaa 699
Query: 436 tcttcagaatatttttcacttccaaatctgtttctattcaattttctcttaatctgattt 495
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttttcagaatatttttcacttccaaatctgtttctattcaattttctcttaatctga--- 642
Query: 496 tttttttgcatttatctcctacccagcacatcgtaattatgtgt 539
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttttttgcatttatctcctacccagcacatcgtaattatgtgt 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 936
Length adjustment: 10
Effective length of query: 529
Effective length of database: 926
Effective search space: 489854
Effective search space used: 489854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_d05.g1 MSMg01no154_d05.g1 CHROMAT_FILE:
MSMg01no154_d05.g1 PHD_FILE: MSMg01no154_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:46 2005
(484 letters)
>mm_chr18_49992823_49993705
Length = 883
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1 atttacattcagtagttcggatttgctgctgctgctgctttttttttttcaggtcaaggt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atttacattcagtagttcggatttgctgctgctgctgctttttttttt-caggtcaaggt 259
Query: 61 tctaaggtcaagtctttgtagttaaaagagtgggtgtcttaaaatggttactgattatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctaaggtcaagtctttgtagttaaaagagtgggtgtcttaaaatggttactgattatta 319
Query: 121 agctagtttaaatgacaatagaatgaaagcggcgcctttctatttattttcccttaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agctagtttaaatgacaatagaatgaaagcggcgcctttctatttattttcccttaaaag 379
Query: 181 ttcaccgatgaaaaactttgccaagaaaatagtctccattcattcctcacgtcctttgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcaccgatgaaaaactttgccaagaaaatagtctccattcattcctcacgtcctttgag 439
Query: 241 ttacttatgtaacggccttgtagtccttgaaaagttttgttcgaggtaattcccgagggt 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttacttaggcaacggccttgtagtccttgaaaagttttgttcgaggtaattcccgagggt 499
Query: 301 ttcacctttgcatcttcagcctgtctcctgtttgctaagggcaagttaagctttatccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 ttcacctttgcatcttcagcctgtctcctgtttgctaagggcaagttaagctttagccag 559
Query: 361 tgtgacttgcttgtcttttctattctatttccagctgttggaaaaaagagagtctcacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgacttgcttgtcttttctattctatttccagctgttggaaaaaagagagtctcacat 619
Query: 421 ttctgccttcgtggttttactgacacttttccatcttagtttagcttttctaataatttt 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 ttctgccttcgtgggtttactgacacttttccatcttagtttagcttttctaatagtttt 679
Query: 481 aag 483
|||
Sbjct: 680 aag 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
