BAC Information

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BAC

Clone NameMSMg01-154D21
Chromosome18 (Build37)
Map Location 4,763,403 - 4,763,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154D21.T7 (MSMg01no154_d21.b1)MSMg01-154D21.TJ (MSMg01no154_d21.g1)
ACCAG355592AG355593
length709714
length of high quality
(start - end)
326 (74 - 399)336 (66 - 401)
definitionCHROMAT_FILE: MSMg01no154_d21.b1 PHD_FILE: MSMg01no154_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:49 2005CHROMAT_FILE: MSMg01no154_d21.g1 PHD_FILE: MSMg01no154_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCGTATAAGCCGCGGATTCTTT
GTTTTTCATGAAACCATTTTTAATATGGTTATTTGATTTTCTGGAGTCCA
TCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGGTTTA
GGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATT
GACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATT
TGTCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTGCAGGAAT
TTTCCCCCTGTGTTCATATCTTTGAGGCTCTTCCCCCTTTCTTCCTTTCT
TCAGTGTCTCTGTTTTTTGTGGAGTTCCTTGATCCAGTTACACTTGAGGA
GATAAGAATGGATTAATTCACATTCTTCTACATGCTAATTGCCAGTTGAG
CCAGCACCATTTGTTGAAAATGCTGTCTTCTTTCCACTGGATAGTTTTAG
CTCCTTTGTCAAAGGTCACGTGACCATAGGTGTGTGGGTTCATTTTCTGG
GACTCCAATTCTATTCAATTGATCTATCTGTCAATCACTGCAACATGCAG
TTCTTTCTGTCTCGCTTTGTTTTGTTTTTCGTTGCCCCGTTGTTTACCCT
TTCTTTGGACCCCCCGCCCGCTATCCCTTTTATTTTCTTAAATTCCCCTT
TCTTAAATC
TTGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCTCACGAGGAGGTGAACTA
TAGAAGTTACCACAAAATTCCAGTGGAGGGATGATGTGATCCTAGACTTA
GATTTTCTTCACTGAGCACACCATGCGAAGTTTTAGCCAAGTCCACATAT
GGTAGGGGTTTGATAAATAGTTTTTTGATGGGTTGATTGAATCCGACTGT
TCCAGATCAAACAGCATCCAATGAGATGGAAAAACCAATCAGGGCTCTCT
CTTTTCCTCAGTTAAAAAGTTTATTTATATTCGTCTTTGCTTATTTCATA
CACAGTATGTATTTTGATCTTATCCCCCATTTCCCATTGCTTTGTTTTGT
CCTCTCTGAACTTCTTCCCAAGGAGTCTCTTTCTACTTCCATGTTGAGCA
TGCATGCACATGTGTGCGCACACGTGTGAATGTGTGCGTATGAATATGCG
TTTGTTCATGTGTGAGTGCATTGTTGTACCCTTTCTTTCTCCTACTCATC
CCATTCTTTTAACCTACCTCTCTCCCTCTCCCTTTTACTTTACGTTTCAC
TCTGTACTTACGTTTTTCCCTTCCCCTGCACCCCACTTTTTCTTTCACTT
TCCCCATCTTCTCCTTTTCTTTTCCCACGTTTTCCCTACAACCAACACCC
TTCTTTTTCTTTCCCCCCAATTTTTTTTCCTCTCTCGTTTCTTTCCCCCC
CCCCTCTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_d21.g1 MSMg01no154_d21.g1 CHROMAT_FILE:
MSMg01no154_d21.g1 PHD_FILE: MSMg01no154_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:49 2005
         (336 letters)



>mm_chr18_4763203_4763938
          Length = 736

 Score =  557 bits (288), Expect = e-163
 Identities = 324/336 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccagtggagggatgatgtgatcctagacttagattttcttcactgagcacaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 536 aattccagtggagggatgatgtgatcctagacttagattttcttcactgagcagaccatg 477

                                                                       
Query: 61  cgaagttttagccaagtccacatatggtaggggtttgataaatagttttttgatgggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgaagttttagccaagtccacatatggtaggggtttgataaatagttttttgatgggttg 417

                                                                       
Query: 121 attgaatccgactgttccagatcaaacagcatccaatgagatggaaaaaccaatcagggc 180
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 416 attgaatccgattgttccagatcaaacagcatccaatgagagggaaaaaccaatcagggc 357

                                                                       
Query: 181 tctctcttttcctcagttaaaaagtttatttatattcgtctttgcttatttcatacacag 240
           ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 356 tctctcttttcctcagttaaaaagtatgtttatattcgtttttgcttatttcatacacag 297

                                                                       
Query: 241 tatgtattttgatcttatcccccatttcccattgctttgttttgtcctctctgaacttct 300
            | ||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 296 aaagtattttgatcatatcccccattttccattgctctgttttatcctctctgaacttct 237

                                               
Query: 301 tcccaaggagtctctttctacttccatgttgagcat 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcccaaggagtctctttctacttccatgttgagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)