BAC Information

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BAC

Clone NameMSMg01-154F17
Chromosome18 (Build37)
Map Location 85,832,461 - 85,832,887
singlet/doubletsinglet
Overlap genenone
Upstream geneCndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154F17.T7 (MSMg01no154_f17.b1)MSMg01-154F17.TJ (MSMg01no154_f17.g1)
ACCAG355670AG355671
length714706
length of high quality
(start - end)
457 (42 - 498)533 (74 - 606)
definitionCHROMAT_FILE: MSMg01no154_f17.b1 PHD_FILE: MSMg01no154_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:58 2005CHROMAT_FILE: MSMg01no154_f17.g1 PHD_FILE: MSMg01no154_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCCAAGCTGTCTCAAATTGACAGTTAAAGATTTTTTCTTTTCTTTTTTT
GTTTTGATTTGTTTTTGTTTCGGTTTGGTTTTGATTTTTCAGTCAGGGTT
TCTCTGTATAGCTCTGGGTGTCCTGGAACTCACTCTGTAGATCAGGCTCG
AACTCAGGAATCCACCTGCATCTGCCTCCTAAGTGCTGGGATTAAAGGCA
TGGGCCACCACTGTCCGGCTTGACAGTTAAAGCTAACTAGTAAAAGAAAA
AAGGCATCTGGAATAGAAGACTCGAGGAAATAGAAAAATAAAGCATACTG
GAATCATGTTGCAAGTGTCATAACTAGTAAGTTGTGATGGTGTATAACGC
TATGGAAGAGGCATCAGAGAGAGAAGAGAGACACAGATTCCCATCACCAC
TCTCCACAGCCTGGGTAGTTACCAGAGAATTTCAGGGACCTTGCCAAGGT
CAAGCAAGGATTTCTGGCTTTGATGATGAAAAGAATTCCAAGACCAACTT
GAAAAAGGAAGCAGAGCTGGAGACTTTATTTGAGAAATTTTATGATAGTC
TTAAATGAGGGAGTTAACAGAAAATGAAGCACTTATAATACCGCATGACT
CACACTGGATTCATGGGTACGGTCTTCTCCCATTGTTTTACTGAATTCAC
ACCCTTCTCTAAGT
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATC
AGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCAATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCCAAGATACCCAAGATATAAGATACAATTTCCT
AAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_f17.b1 MSMg01no154_f17.b1 CHROMAT_FILE:
MSMg01no154_f17.b1 PHD_FILE: MSMg01no154_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:58 2005
         (457 letters)



>mm_chr18_85832032_85832887
          Length = 856

 Score =  766 bits (396), Expect = 0.0
 Identities = 420/428 (98%), Gaps = 1/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 30  acagttaaagattttttcttttctttttttgttttgatttgtttttgtttcggtttggtt 89
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 856 acagttaaagtttttttcttttctttttttgttttgatttgtttttgtttgggtttggtt 797

                                                                       
Query: 90  ttgatttttcagtcagggtttctctgtatagctctgggtgtcctggaactcactctgtag 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttgatttttcagtcagggtttctctgtatagctctgggtgtcctggaactcactctgtag 737

                                                                       
Query: 150 atcaggctcgaactcaggaatccacctgcatctgcctcctaagtgctgggattaaaggca 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atcaggctcgaactcaggaatccacctgcatctgcctcctaagtgctgggattaaaggca 677

                                                                       
Query: 210 tgggccaccactgtccggcttgacagttaaagctaactagtaaaagaaaaaaggcatctg 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgggccaccactgtccggcttgacagttaaagctaactagtaaaagaaaaaaggcatctg 617

                                                                       
Query: 270 gaatagaagactcgaggaaatagaaaaataaagcatactggaatcatgttgcaagtgtca 329
           ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaatagaagactctagaaaata-aaaaataaagcatactggaatcatgttgcaagtgtca 558

                                                                       
Query: 330 taactagtaagttgtgatggtgtataacgctatggaagaggcatcagagagagaagagag 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taactagtaagttgtgatggtgtataacgctatggaagaggcatcagagagagaagagag 498

                                                                       
Query: 390 acacagattcccatcaccactctccacagcctgggtagttaccagagaatttcagggacc 449
           ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 acacagattcccaccaccaccctccacagcctggatagttaccagagaatttcagggacc 438

                   
Query: 450 ttgccaag 457
           ||||||||
Sbjct: 437 ttgccaag 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space:   378162
Effective search space used:   378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)