BAC Information

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BAC

Clone NameMSMg01-155C09
Chromosome18 (Build37)
Map Location 7,549,756 - 7,550,091
singlet/doubletsinglet
Overlap geneMpp7
Upstream geneLOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
Downstream geneEG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C09.T7 (MSMg01no155_c09.b1)MSMg01-155C09.TJ (MSMg01no155_c09.g1)
ACCAG356245AG356246
length736734
length of high quality
(start - end)
558 (51 - 608)335 (75 - 409)
definitionCHROMAT_FILE: MSMg01no155_c09.b1 PHD_FILE: MSMg01no155_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:00 2005CHROMAT_FILE: MSMg01no155_c09.g1 PHD_FILE: MSMg01no155_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGT
AATTCTCAATAGATGCCTCTCAAATGGCCAAGAAGCCCCTAAAGAAATGT
TCAACATCTCTAGTCATCTGGAAAATGAAAATTAAAATGACTCTGAGATT
ACACCCTATACACAACAGAATGACTAAGATAAAAAACTCAGTTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGATGAACACTCCTCCATTGCTGGTGG
GATTGCAAACTGATGCAACCACTCTGGAAATCAATCTGGCGTTTTCTCAG
AAGATTGGGAATAGTTTTACCTCAAGACCCAGTTATACCACTCCTGGGTA
TATACCCAAAACATATTCCACCATCCCACAAGGACACTTACTCAGCTATG
TTCACAGCAGCTTTATTTGTGATAGTCAGAAACTGGAAACCACCTAGATG
TCCCTCAACTGAAGAATGGATAAAGAAAATGTGATACATCTACACAATGG
AATATTGTTCAGCTATTAAAAACAAGGGCATCAAGAATTTCACAGGTAAA
TGGATGGAACTAAAAAATATCATCCTGAGTGAGGTAACCCAGACCCAAAA
GGATATACATGGTATGCACTCTCATATATGGATATTAGCCATAAAGTACA
GAATACACGTGCAATAAACAACACACCCCCAGGAGCCAAATAACAAGGAG
GGCCCAAGGAGGATGATTGAATCTTGCTCAGAGTGN
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCACAATGAATCTGTTGGCTCCC
CTTAATAACGTGTAGCTGTCTTGTTGATTCTATGGTAAGTTCAGGAAGAA
CCCAAGAAATGCAACAATAAGACACATTTCTCTTAATATAGACCTCATAT
TGAAATACATGCTAATTATTTGATTTTGTTGCGTATATCTTGAGCTCACA
AAGCAGTTGATACTGTTTAATTTCTGTAATAAAGAGCTCTTATTTTAATG
TTTTATAAAAATCAAGCTTTAAAAGTCAGTGATACAAAAAAAAAAGAATC
ACCCACACAAAAAAATACAGATATGAAGTAGTGTTATTATGAGCAGTTTT
AACCACAAAAGATTAACATTGCTGGTGAAATGGCTGAGCCTTAAAAGTAT
ATATATATTACTAACACTGACCCAAGATGAAATGCAAATCTTCAATATTC
CTATTACAATCTTCAAGTCTGGTCTGTCTACAAAGCATGTTCTAGGCAGT
TACAACTACCCAGTGACACCCTGTCCCACAAATACAACAACCCATTAACA
CTTTCATTACCTTTTAGAATATGAACAGGAAACTGTACGCTACACCCATT
CCCGTATACACTTTTCGATTATTTTCTGATCCATTTATCTTTATTACTAC
CTTATCATTATCTGTCCACTGTGCCCCTTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c09.g1 MSMg01no155_c09.g1 CHROMAT_FILE:
MSMg01no155_c09.g1 PHD_FILE: MSMg01no155_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:00 2005
         (335 letters)



>mm_chr18_7549556_7550291
          Length = 736

 Score =  596 bits (308), Expect = e-175
 Identities = 329/336 (97%), Gaps = 1/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccacaatgaatctgttggctccccttaataacgtgtagctgtcttgttgattctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 actccacaatgaatctgttggctccccttaataacgtgtagctgtcttgttgattctgtg 260

                                                                       
Query: 61  gtaagttcaggaagaacccaagaaatgcaacaataagacacatttctcttaatatagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagttcaggaagaacccaagaaatgcaacaataagacacatttctcttaatatagacc 320

                                                                       
Query: 121 tcatattgaaatacatgctaattatttgattttgttgcgtatatcttgagctcacaaagc 180
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccatattgaaatacatgctaattatttgattttgttgtgtatatcttgagctcacaaagc 380

                                                                       
Query: 181 agttgatactgtttaatttctgtaataaagagctcttattttaatgttttataaaaatca 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agttgatactgtttaatttctgtaataaagggctcttattttaatgttttataaaaatca 440

                                                                       
Query: 241 agctttaaaagtcagtgatacaaaaaaaaaa-gaatcacccacacaaaaaaatacagata 299
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 441 agctttaaaagtcagtgatacaaaaaaaaaaagaatcaccaacacaaaaaaatacagata 500

                                               
Query: 300 tgaagtagtgttattatgagcagttttaaccacaaa 335
           |||||||||||||||||||| |||||||||||||||
Sbjct: 501 tgaagtagtgttattatgagtagttttaaccacaaa 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 736
Length adjustment: 9
Effective length of query: 326
Effective length of database: 727
Effective search space:   237002
Effective search space used:   237002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)