Query= MSMg01no155_i03.b1 MSMg01no155_i03.b1 CHROMAT_FILE:
MSMg01no155_i03.b1 PHD_FILE: MSMg01no155_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:26 2005
(569 letters)
>mm_chr18_9998056_9999024
Length = 969
Score = 1019 bits (527), Expect = 0.0
Identities = 553/565 (97%), Gaps = 7/565 (1%)
Strand = Plus / Minus
Query: 6 ggaattcactgtgtatacccggctggcctcaaatttagaaatctgcctgcctctgcctcc 65
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggaattcactgtgtagaccaggctggcctcaaatttagaaatctgcctgcctctgcctcc 782
Query: 66 caagtgctgggattacaggcgtgtgccaccactgcccgtggtagaattgttttctatttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 caagtgctgggattacaggcgtgtgccaccactgcccgtggtagaattgttttctatttg 722
Query: 126 atgaaactgtggaaataatcaatgtttggagactttttagttttcaaaggtctgattcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgaaactgtggaaataatcaatgtttggagactttttagttttcaaaggtctgattcag 662
Query: 186 tttcctgtataggacatgtacagaattattcaagtgaactatttcacaatgtatctgttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttcctgtataggacatgtacagaattattcaagtgaactatttcacaatgtatctgttc 602
Query: 246 ttatgtaattgacaaatttcattagcatttcccatttgtctatggagattttcattaact 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttatgtaattgactaatttcattagcatttcccatttgtctatggagattttcattaact 542
Query: 306 gttttcatgcgtgtagggcaaatctaacccatttctttactgttaactgaaatttgtctc 365
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttttcatgtgtgtagggcaaatctaacccatttctttactgttaactgaaatttgtctc 482
Query: 366 tattcttgaggattcccaattttattggtattttaaggtctggccttgttttgttgagtt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattcttgaggattcccaattttattggtattttaaggtctggccttgttttgttgagtt 422
Query: 426 ttctgttttccattatttttatttgatttgaggcctgtttaatttttccccattagtaag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttctgttttccattatttttatttgatttgaggcctgtttaatttttccccattagtaag 362
Query: 486 atgagttgaggtagtgaattcttactatattttagttaatcatactacttttttttttgt 545
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 361 atgagttgaggtagtgaattcttactacattttagttaatcatactactttttttttt-- 304
Query: 546 ttttttgttt-ttcgagacagggtt 569
|||||| ||||||||||||||
Sbjct: 303 ----ttgtttgttcgagacagggtt 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_i03.g1 MSMg01no155_i03.g1 CHROMAT_FILE:
MSMg01no155_i03.g1 PHD_FILE: MSMg01no155_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:26 2005
(503 letters)
>mm_chr18_9815163_9816065
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Plus
Query: 1 tccatacgtccatgaagcctgctccattctctactaaaggctatcagaatgatttctgtc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatacatccatgaagcctgctccattctctactaaaggctatcagaatgatttctgtc 260
Query: 61 aatttggtgtaaggttctcaggggatgagtggaaagaatgaatcagaaggaagaaataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttggtgtaaggttctcaggggatgagtggaaagaatgaatcagaaggaagaaataca 320
Query: 121 gattcagagagtagggagactgggggtgcatagggagtaatgaaaggtgacaggagtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattcagagagtagggagactgggggtgcatagggagtaatgaaaggtgacaggagtcag 380
Query: 181 ggtaaaaaggttggaactaagtagatgacatcatactaaaagtgctgaaagcataaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaaaaaggttggaactaagtagatgacatcatactaaaagtgctgaaagcataaagca 440
Query: 241 gtggagatttctttttccttttattgaaaatagatttttttcatacactatatcctgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggagatttctttttccttttattgaaaatagatttttttcatacactatatcctgata 500
Query: 301 tagttttccttccctcttctgcccccagttcctctccatggcctctcctctccagatcca 360
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tagttttccttccctcttctccccccagttcctctccatggcctcacctctccagatcca 560
Query: 361 gtccctttctgtctctcattagaaaagagcctgtttctaagagataacaaccaaagatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccctttctgtctctcattagaaaagagcctgtttctaagagataacaaccaaagatga 620
Query: 421 caaaataaaatacaataagatacaacaaaaaacattacattaaagttgggtttgaaactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaataaaatacaataagatacaacaaaaaacattacattaaagttgggtttgaaactc 680
Query: 481 aatatgaggaaaagagtctcaat 503
|||||||||||||||||||||||
Sbjct: 681 aatatgaggaaaagagtctcaat 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
