BAC Information

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BAC

Clone NameMSMg01-156D05
Chromosome18 (Build37)
Map Location 4,974,816 - 4,975,105
singlet/doubletsinglet
Overlap geneSvil
Upstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneZfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D05.T7 (MSMg01no156_d05.b1)MSMg01-156D05.TJ (MSMg01no156_d05.g1)
ACCAG357000AG357001
length717719
length of high quality
(start - end)
320 (46 - 365)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no156_d05.b1 PHD_FILE: MSMg01no156_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:16 2005CHROMAT_FILE: MSMg01no156_d05.g1 PHD_FILE: MSMg01no156_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTACTTGCCTTGGTGTAGTTACAGTCTTTTTCTGGCTTCTTTT
AGCCACTGTTTTCCACCTCGAAGGGTGTATCTCAAATAAGTAACTTCAGT
CTGACACAACTGAGCCTCTTTAGCTGAGGCTCTGTTTTCTGTTGCCCAGA
TTTCCTGTCTAGATCTTGTCTTTTTCTTTCTCTCCTATCACTGTGGCCAA
GATTCTAGTCAAATTTCTCTCTTGTCTATGATCCCTCTAGTCTTCTCTTT
ATTCTGCCTCTCATCTCTCCCCTCTCTCTCTCTCTCTCTCCCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTGCCCTTT
CTTCTCTCGTAATACCCCCCCCCAGCCAATTATTGTCTCCACTCTATTTA
TTTCTCACTCAAGATATCTCTCTCATCCCGGACCTCTTTAATCTCTTTCA
TCTCTATTTTCACTGTTATCTCTCTCTCCTGAGCCTACTGAAGTTTTGCT
CTTCCTCACCGTCCACGTTCACCTTTTTTTATACCACTACATATCCTCGT
TACACCCTGGTGTATACGTGCTGTTTACCCGGTACATATTTCTCCCCTAC
CCCCATGTCTTTCTTTTCTGGCCCTTATTCCAACCTGTTGGTGTCCTATA
ACACAAACCATTTTTGN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGTTACAGTCCACTGCTTACAGTACA
ACAATGAGGAGAGTCAGTGTATGTTCAGTATAGGGGTTTGCTTGCTCGGA
ACATGCCTGGTCTGCAGAGGTTGAGGAATCCGTAGGCTCAGGGGTCTGAC
CCTTCATCTTAACCTTTAGGATTGCCTTAGCCACAGCAATGATTGACTGT
GATCAGAACTACAGAATACTCATCAATCAATATTTGGCTGCTTCTAAAGA
CTAAATACCTCTTTAATAAAATTGTCAAAACAATTTCAAGATATAAATAA
ATAACACCAAATATTATCAAACCCCACCCACCAACAACTCACTATGAAAG
GGGCTCTGCTGGTAGGAGCCGCCATGACAATAGACATCACCGTGTGCCTG
CTAATAGGCTAGGCCTAGCCCAGCTCCTTGCACATATACTTAACAGACTG
CTACTTTCAGCTTCTCATTCTGTTAGCATTAAATCTACATGGGAACAAGT
TGAAAGAAAACTACTAGTAAGAAACTAGATTGTTGGTGAAAGAAACCAGT
ATAGAAGCAAAGGACAATGACAAAGTGAAAAGATACTACCCAGAGACAGC
TAGCGGATACAAGGTGGAGGAAGGGCTCCTGTCACAACTCTCCAGGCCCA
ATGCTATGCCTTTAGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d05.g1 MSMg01no156_d05.g1 CHROMAT_FILE:
MSMg01no156_d05.g1 PHD_FILE: MSMg01no156_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:16 2005
         (290 letters)



>mm_chr18_4974616_4975305
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgttacagtccactgcttacagtacaacaatgaggagagtcagtgtatgttcagtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attgttacagtccactgcttacagtacaacaatgaggagagtcagtgtatgttcagtata 431

                                                                       
Query: 61  ggggtttgcttgctcggaacatgcctggtctgcagaggttgaggaatccgtaggctcagg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggggtttgcttgctctgaacatgcctggtctgcagaggttgaggaatccgtaggctcagg 371

                                                                       
Query: 121 ggtctgacccttcatcttaacctttaggattgccttagccacagcaatgattgactgtga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggtctgacccttcaccttaacctttaggattgccttagccacagcaatgattgactgtga 311

                                                                       
Query: 181 tcagaactacagaatactcatcaatcaatatttggctgcttctaaagactaaatacctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcagaactacagaatactcatcaatcaatatttggctgcttctaaagactaaatacctct 251

                                                             
Query: 241 ttaataaaattgtcaaaacaatttcaagatataaataaataacaccaaat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttaataaaattgtcaaaacaatttcaagatataaataaataacaccaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)