BAC Information

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BAC

Clone NameMSMg01-156H10
Chromosome18 (Build37)
Map Location 31,631,284 - 31,631,415
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666111, EG666114, LOC433168, Rit2, EG666130, Syt4
Downstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H10.T7 (MSMg01no156_h10.b1)MSMg01-156H10.TJ (MSMg01no156_h10.g1)
ACCAG357199AG357200
length713712
length of high quality
(start - end)
316 (45 - 360)134 (429 - 562)
definitionCHROMAT_FILE: MSMg01no156_h10.b1 PHD_FILE: MSMg01no156_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:36 2005CHROMAT_FILE: MSMg01no156_h10.g1 PHD_FILE: MSMg01no156_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAA
TTCAAGGCCCATACCTAAACATGATAAAAGCAATACACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGAACCAAACAAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGTAC
TTGAAGTCCTAGTTAGAGCAATTCAACAACAAAAGGAGATCAAGGGGATA
CAAATTGAAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATATTTGACCCTAACCCATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAACCACCTGGATATAAAATTAACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGAG
ATACAACACCCTTCTCAAGGGTCACAAATAATATAAAATACCTTGGCGTG
ACTCTACCTAAGGAAGTGAAAGATCTGTATGAAAAGAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAACA
ATCTACAGATTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATAATGGGCTAATTTGGCAA
AGGAAACCTTAAAAGAGAATGACGTGTGCCATGCCTATGTTCCCTTGTTT
TATCAAGGGTCATAGTAGGATTACCCAAAATTGAAAGGCAAAGATAATTT
TTTAAATTGTGCAATCAGGTGTGGAAAGAAGGTGTTTCAAGGTTGCAGAC
AATGCGGATGAAAAGAGATGAAGGTTTTAGAGAAATTATCCACATTAAAG
ACAAACCCAGTGTTCTGCCTTGGAACAATAAGAAAGGTACCTAACCATCA
AAGGCTCCAATTTTATTTTCAATGCACCCCCATTTGAATGGTGAAAACCT
GAGAACGAAGGGCTGAGAATGCCCACGAAAGGATTCTACTCAGAAAAAGT
TTTATAGATTCGGTGTACAGATGCTACTGAAGTCTGCATCTCAAACTGAT
AATACAATTTGACAGCATTGTTCATGTATTATACTAGTTTTGCTGACATG
AAAATTGGGAGAGGGATGGAATCATGGGAGTGTATCCCAAAGTTCTAGAG
AGCCATTGTGATCAGGCAATGTCCAACAAGGTCAGATGCTCCATGAAGAG
GTTCTGCAAAACTATTACTTGAACAGTGAAGTTAAATCCTAAATTAAGGG
GGTTACCATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h10.g1 MSMg01no156_h10.g1 CHROMAT_FILE:
MSMg01no156_h10.g1 PHD_FILE: MSMg01no156_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:36 2005
         (134 letters)



>mm_chr18_31631082_31631615
          Length = 534

 Score =  240 bits (124), Expect = 3e-68
 Identities = 130/132 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggattctactcagaaaaagttttatagattcggtgtacagatgctactgaagtctgcatc 62
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 334 ggattctactcagaaaacgttttatagattcggtgtacagatgccactgaagtctgcatc 275

                                                                       
Query: 63  tcaaactgataatacaatttgacagcattgttcatgtattatactagttttgctgacatg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcaaactgataatacaatttgacagcattgttcatgtattatactagttttgctgacatg 215

                       
Query: 123 aaaattgggaga 134
           ||||||||||||
Sbjct: 214 aaaattgggaga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)