BAC Information

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BAC

Clone NameMSMg01-156M15
Chromosome18 (Build37)
Map Location 82,629,239 - 82,629,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
Downstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M15.T7 (MSMg01no156_m15.b1)MSMg01-156M15.TJ (MSMg01no156_m15.g1)
ACCAG357439AG357440
length748865
length of high quality
(start - end)
327 (14 - 340)281 (190 - 470)
definitionCHROMAT_FILE: MSMg01no156_m15.b1 PHD_FILE: MSMg01no156_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:00 2005CHROMAT_FILE: MSMg01no156_m15.g1 PHD_FILE: MSMg01no156_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTTTCAGAGGATCCGCGGAATTCTTTGTTCTTTCCTGAGCCCCATT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTCCCTTAT
ATATGTTGGATATTGGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTACTGACGGTGTCTTTTGCCTT
GCAGAATCTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCAATCTTA
CAGTACTAGCCATTGCTGTTCTGTTCGGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTCCCCACTTTCTCCTCTATTTTTTTCAGCGCCTCCGC
CTTTATGTGAAGTTCCTTGATCCACTTATATTTGACCCCCCCCCCAAGAA
ATAAGTATGCTTCGATTCGCATTCTTCTACATGATAACACTCAGCTGTGT
CTGTTTCCATTTGTTGAAAACGCTGTCTTTCCTTTCCACTTGGTGGTATT
AACCTCCCTCGTCCTACTATTACAGTGTTTCTAATTTGTTGATTTTTTTC
ATTCTACCTCTTTTTCCATTTAGTTTTCATTAGATTAAAATTTCATTTTC
TTTTTTTTTTCTTTATTTCTTTACCAATTTTAATTTAATATATAATATAT
ACTTTTTTTTTATCTACTACCTCATAACATCTATTATTTTTTGTTACATA
TATAACTAATATCCTTCATCATTCTCATATCTAATTATAACCACAATN
TAAATAATGTATTTTTATTTTTTTTTTTTACTATCTTTTTTTANTTNTTT
TNNNNNTAGTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTCAATA
TTTTTGCTTAGTTGCAGCAAAGCACGGGTGTATTGAACACGATGCCTATC
AGAAATTTCTCATGGGTGAGGAGACATTCTTCAGTGAGATAAAGTCATAA
AGATGTGTTGACTTGGAACTTGTCCTGGGAAACTCAAAACTCAGCCCTGT
CCAAAACTGATAATTCAGGTTTTGTAGGGTCATGAGTATAAACAGAAATC
TTAAATGCTGAAGTAAGAAGACATAGCTGCTAGTTTGTATTGCTAAGAGA
TCAGCAATGAGAAATTACAATTTTCCATAGATTATAAATTTTTATTTTCA
CATTATGTGTAAGAATATGTCTGCGTGTCCCACCCCCGTACAAGTGTGTG
AGTGTGTGTGAATTGTAAAATAGAAAGCCGTATTATCTTTTCTATACTTT
ACTTTTTTTTTAACTTATAACTATAATTACTATCCATCACATTTTTTTTT
TTTTTCCCTTACCAATGGTTATCCCATTACTTATTTTTCTCATATTTTTT
TATTTTTCTATTTTTTTCCTATTATTACACCTCTATTTATTTTCTTATAC
TTCTATTTTTTTCTTCTCTCTCCCGACTTTTTTTTTTTATTCTTCTATCA
CTACCATTCCTTTTACGAATGTTTATTTCATTGCTTCTTTTGTATTACTC
TTCGTCCTTCATCTCTTCTACTCTCCATCTTATTCATGCATCTTGTCTAC
TATATTTCACTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m15.g1 MSMg01no156_m15.g1 CHROMAT_FILE:
MSMg01no156_m15.g1 PHD_FILE: MSMg01no156_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:00 2005
         (281 letters)



>mm_chr18_82629039_82629719
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgatgcctatcagaaatttctcatgggtgaggagacattcttcagtgagataaagtcata 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 481 cgatgcctatcagaaatttctcatgggtgaggagacattcttcagcgagataaagtcata 422

                                                                       
Query: 61  aagatgtgttgacttggaacttgtcctgggaaactcaaaactcagccctgtccaaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagatgtgttgacttggaacttgtcctgggaaactcaaaactcagccctgtccaaaactg 362

                                                                       
Query: 121 ataattcaggttttgtagggtcatgagtataaacagaaatcttaaatgctgaagtaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 361 ataattcaggttttgtagggtcatgagtataaacagaaatcttaaatgcagaagtaagaa 302

                                                                       
Query: 181 gacatagctgctagtttgtattgctaagagatcagcaatgagaaattacaattttccata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 gacatagctgctagtttgtattgctaagagatcagcaatgagaaattacaattttccaaa 242

                                                    
Query: 241 gattataaatttttattttcacattatgtgtaagaatatgt 281
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 gattataaatttttattttcacattatgtgtaaaaatatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)