Query= MSMg01no157_k24.b1 MSMg01no157_k24.b1 CHROMAT_FILE:
MSMg01no157_k24.b1 PHD_FILE: MSMg01no157_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:04 2005
(320 letters)
>mm_chr18_69957878_69958597
Length = 720
Score = 572 bits (296), Expect = e-168
Identities = 309/314 (98%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 5 gaattcccttttttgttttttttgtttttttggtttttttggtttttcgatacagggctt 64
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 208 gaattccctttttt-tttttttttttttttt--tttttttggtttttcgatacagggctt 264
Query: 65 ctctctgtatccctggctgttctggaactcactctgtagaccaagctggcctcgaactca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctctgtatccctggctgttctggaactcactctgtagaccaagctggcctcgaactca 324
Query: 125 gacatcctcctacctctgcctcccaagtgctggaattaaaggcatgtgccacaccactgc 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gacatcctcctacctctgcctcccaagtgctggaattaaaggcatgcgccacaccactgc 384
Query: 185 ccagcatgaattcactttttgacacactcacaaccaagtaatagcaaaccatgtatgtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagcatgaattcactttttgacacactcacaaccaagtaatagcaaaccatgtatgtta 444
Query: 245 cacgccagtgaattttatattatgtcaaatgggagcataaaagtccgggactgggttcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacgccagtgaattttatattatgtcaaatgggagcataaaagtccgggactgggttcct 504
Query: 305 atcctgtgggcctc 318
||||||||||||||
Sbjct: 505 atcctgtgggcctc 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_k24.g1 MSMg01no157_k24.g1 CHROMAT_FILE:
MSMg01no157_k24.g1 PHD_FILE: MSMg01no157_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
(288 letters)
>mm_chr18_70109976_70110663
Length = 688
Score = 534 bits (276), Expect = e-156
Identities = 285/288 (98%)
Strand = Plus / Minus
Query: 1 attctcgccgcattcctgattaaactgggacagatggtggaggttttaagccctgtgttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 attctcgccgcattcctgattaaactgggacagatggtggaggttttaagtaatgtgttc 429
Query: 61 attaccagaccgcacagcactaatggctatttgctggagcgaggccttgctcaagcgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attaccagaccgcacagcactaatggctatttgctggagcgaggccttgctcaagcgagt 369
Query: 121 agcaaatgaatccttcccaggggcagccactgctagggcagcatctatcaggcattgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcaaatgaatccttcccaggggcagccactgctagggcagcatctatcaggcattgtga 309
Query: 181 ggctgtgtgtggggccactgctagggcagtgtccatcaggtgttctgagcatgtgtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggctgtgtgtggggccactgctagggcagtgtccatcaggtgttctgagcatgtgtgctt 249
Query: 241 ctcaccttcacttctgcttcgaagttgcatctgtccccagtaagacag 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctcaccttcacttctgcttcgaagttgcatctgtccccagtaagacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
