BAC Information

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BAC

Clone NameMSMg01-157L05
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L05.T7 (MSMg01no157_l05.b1)MSMg01-157L05.TJ (MSMg01no157_l05.g1)
ACCAG358110AG358111
length735731
length of high quality
(start - end)
510 (41 - 550)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no157_l05.b1 PHD_FILE: MSMg01no157_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:05 2005CHROMAT_FILE: MSMg01no157_l05.g1 PHD_FILE: MSMg01no157_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:05 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCAACT
GACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTAATG
GAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTAC
ACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGCC
AATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTTT
TTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCAC
ATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTAATACTTCCCCCGCGATTGCCGTAACTTGCAATCTAGTGGGCTTATGT
TTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATATTTTAT
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAC
TTTATTTTATTTTTTTTCTNTCNTTTTTTTNTTTTCACTTTTTATCCCCT
CTCAAATCCTTCTATACTCAACAATATAACCAACAAACAATATATTATAA
TTATTTATCTTCTTTTCTTATAACCAACTTATTATACTATCTACTCCAAT
TTATATTTTCATACATTTAATCTTCTTTTTTTTTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTAGGAACATGTCCTTGTTGTATACTTAT
CCTGCTCCCATTAATTGGGGTACTCTACTGTGGCAAGGGTACTTGCCATG
TCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCT
TCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCGAGAACTTATACTTTAC
TCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTGCA
CTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCCGT
CCCCATTTTAGCTTCTAACACCAAATGCCAGAAAAGTGTATACATGGGTT
TGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGCCTATTGCAG
ATAACTATAGAACAAAGGAAGCTTCTATTCTGATTGGTTTCCGAGGACAC
ATCCAACAAGAATATGTAGTCAATTCTGGCAATAATGGCAGAAACAAGCT
ATGAGAAAGTGTCCTTATAATAGTAGTTAACAGCACAAAATGGCAGGCTA
GCCAGGTAAGAGGTTACCTAGGCCTTATCTAATCTGAAGTAGGCCTTCAC
ATTCCATCTAGGCCTTAATATTTTACCTATACCTTANCAGCCAGCAGTTT
TGCCCTCTGAGCCATCGCACATGCATGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l05.b1 MSMg01no157_l05.b1 CHROMAT_FILE:
MSMg01no157_l05.b1 PHD_FILE: MSMg01no157_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
         (510 letters)



>mm_chr18_40467472_40468380
          Length = 909

 Score =  377 bits (195), Expect = e-109
 Identities = 237/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space:   449500
Effective search space used:   449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)