BAC Information

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BAC

Clone NameMSMg01-157L23
Chromosome18 (Build37)
Map Location 39,373,200 - 39,373,558
singlet/doubletsinglet
Overlap geneArhgap26
Upstream geneLOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream geneNr3c1, Pabpc2, LOC100041939, Yipf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L23.T7 (MSMg01no157_l23.b1)MSMg01-157L23.TJ (MSMg01no157_l23.g1)
ACCAG358145AG358146
length731733
length of high quality
(start - end)
324 (377 - 700)359 (375 - 733)
definitionCHROMAT_FILE: MSMg01no157_l23.b1 PHD_FILE: MSMg01no157_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:09 2005CHROMAT_FILE: MSMg01no157_l23.g1 PHD_FILE: MSMg01no157_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTTATATATGTGGGACCCCATGAAATTATCCCCCTTCTGTATTAGTATGT
CCATTGTTCTGGTTTTACCTGTGTAACTGTTTCTTGGAGAGACTCTTTCA
CAGTAGACATCCTGGTATTCTGGCTTTTACAATCGACTTTCTCTTCTGCC
ATGTTCCCTGACCCATTGATGTAGGAACTATGATGTAGATGTATCCATTT
GGGGCTGGGCTTCCCTGAGACTCAATCTGTTGATCTCTGCATTGTGTCCA
GTGTGGTTTTCTGTGATGGCTGCCGTCTGCTGCAGGGAGATGCTTCTTTG
ATGAGTTTTGTTTGCCATACCTACCTCTGCAGATTCACAGCTAGGAACTA
GAGGGAACGTACGTGTTTGTTTTGACCGGCCTGGGTTACTTCACTTAGTA
TAATCTTTTCTAGGTCCATCCATTTCCCTGCAGTTTCCATGATGGCTTTT
CTTTGCAGCGGAGCATTAGTCCATGTGTATGTGCACTGTGTTTCCATTAG
CCATTCATCTGTTGATGATCATGAAGGCTCTTTCCTGGCTATTGTGAAGA
AGGCAGCAGTGAACATTGTTGAACAAGAATTTTTAGAGAAGGACGGTGAG
TCCTTTGGGCTATGCCAAGGAGTGGTATCAGCTGGCTCCTATTTTAGGTT
NTTTTTTGTTTGGTTGTTTGTTTTTTGAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTGGCTCAGTTAAAATCTAGATACACTGAA
CTCCGTTTCTGTAATTGATCGCCCATTCGCATTCACTTACCATCAGCCCC
CTCTGCCAAATCCCATGCCATTCTAAACAGACTGGTTTTTTAAAAGTCCC
CTGTGTGTTAAGTGACGAGCTAACAAACTATCCTCCATGGCTAAAAGTCA
CCACTGCCTGATCTACAGATAAAGCTTTACTGGCCAGTACTCCTCCATTC
ACCCCCATAGCATCAGTGGCTGCTCTCACACTAGGGCCATAGAGGAAATC
AACAATTCCTCTTACTAAAACTATTTCCCCTCTGCCCCTTTACTGAAAAG
CAAGATCTCTGTGGTAAATGATGGCATTTACAAAATCAACAAATTTATGG
TGTTTGTGCCTCCCACTCATACCACACTAAGTACATATCAGAAACAGCTA
CTTAGAACGCTCCAGAGGTACTAGCGTTGAGACATGCAGCCACCAGAATT
GAATGAACTGCCCTCAGGGGGCTTCAAGATAGAGAAAATGGCTACCTCCC
TCTTTCTCCTCATTGTTCCCTGCAAGAGCAGATCTGTCAGTCCAATGGCT
TTTCTCAACGCTGGGTTTTCCTTGTTCTGTGCGAGTTGTTGTTCTTTTGG
TTTTGTAGCAAGGTCTCACTATGTTACCCAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l23.g1 MSMg01no157_l23.g1 CHROMAT_FILE:
MSMg01no157_l23.g1 PHD_FILE: MSMg01no157_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:09 2005
         (359 letters)



>mm_chr18_39373000_39373758
          Length = 759

 Score =  694 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccctctgcccctttactgaaaagcaagatctctgtggtaaatgatggcatttacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcccctctgcccctttactgaaaagcaagatctctgtggtaaatgatggcatttacaaa 500

                                                                       
Query: 61  atcaacaaatttatggtgtttgtgcctcccactcataccacactaagtacatatcagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcaacaaatttatggtgtttgtgcctcccactcataccacactaagtacatatcagaaa 440

                                                                       
Query: 121 cagctacttagaacgctccagaggtactagcgttgagacatgcagccaccagaattgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagctacttagaacgctccagaggtactagcgttgagacatgcagccaccagaattgaat 380

                                                                       
Query: 181 gaactgccctcagggggcttcaagatagagaaaatggctacctccctctttctcctcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaactgccctcagggggcttcaagatagagaaaatggctacctccctctttctcctcatt 320

                                                                       
Query: 241 gttccctgcaagagcagatctgtcagtccaatggcttttctcaacgctgggttttccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttccctgcaagagcagatctgtcagtccaatggcttttctcaacgctgggttttccttg 260

                                                                      
Query: 301 ttctgtgcgagttgttgttcttttggttttgtagcaaggtctcactatgttacccaggc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttctgtgcgagttgttgttcttttggttttgtagcaaggtctcactatgttacccaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)