BAC Information

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BAC

Clone NameMSMg01-157P10
Chromosome18 (Build37)
Map Location 86,911,348 - 86,911,652
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881
Downstream geneLOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157P10.T7 (MSMg01no157_p10.b1)MSMg01-157P10.TJ (MSMg01no157_p10.g1)
ACCAG358304AG358305
length729732
length of high quality
(start - end)
313 (40 - 352)239 (122 - 360)
definitionCHROMAT_FILE: MSMg01no157_p10.b1 PHD_FILE: MSMg01no157_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:25 2005CHROMAT_FILE: MSMg01no157_p10.g1 PHD_FILE: MSMg01no157_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAAAATCCAATCCTTTTGCGGATGCTGTTAGATATGGCTCTGAAACACTG
GGTGTGAGTTCTGGGAAGCGAACTCTGGTCCTTTCCAAGCTAGTATGCTT
TAATAATGCCAAAGCTATTGAAGGACCCCCGAAGACAGACCCTTACTCAA
GTCTCGGGAATAGCGCGCACCCAGCGAGACACTGAGACCGAACTTACTGT
AATCACACGAGGAAGTTTATTAACCGCGAGAAGACAAGACAAGAGCTCAA
ACCAGCATGTTAGGGCTGAGACTCATACACCATGCAGGGGTAGAGGAGTT
TGATTTGAAGCCCCCCCCACTAGGCTTATAAAGGCAAAAACCACAAACCA
GGGGGAGGATCAGGAAGGAAATAGGGGAAGTCTGGGGGCGGATGTTTGTT
TCAAGGCACCTGTGACATTGAAACATTCTGCAGTTGTTTTTCTCAAAAGT
CCCGGGGTAATTAGGCCATCTGGCAGGGAGCCTGGGCCCATGTTCTCAGG
GCAGTCAGTATTTTTCTACTCTTCACTATCTCTCCAGCCCCCCGATTCTT
TTTCTTAAGACCAAATCAGTCCCAAGGTGATTTTGGACTAGTGATACAGG
TTACAGGTTTGAACCAACAAACATGCTTTGATTCAGAGCAGATATTAAGA
TTGAAAACTAAGATGGCAGGAACGGTGTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTTTCTTGTGACTATGCACATGCAGATA
CTTACACACACACTTCATACACACACCTATACACATACATACACACAGAG
AGAAATACGCATACACTCCCAGACACACTTACACACACGTACAGCACACA
CATATGCACACAAACTCATACACATGCACAAAACCACATAAACATACATA
TGTACCCATATTCAAACACACACACACACACACATATATATATATATGTA
TGTGTGCATATGTATATATGCACAATACTGTACAGATATACATATGCACA
CATACACATGCATAACCACACATAAACACATACATGTACCCACATTCAAA
CACATACTTGCACACCTCACTGAAAGATGGAGCAAATTGAGAATAGAATT
ATTAATAGAAATATTAATGCTGTACTTTAAACTTATAATTAGAGTAAAAA
TAAATAAAAATATTTAGAGAGTAGGATGGAGGTCATAGAATTTCTCTTAG
TTCATTTTCCAGTTGTGTGATAAAATGCCTATTAGAGCTACAGATAGAAG
GAATAGTATTGTGGAATGTTTTATATATTAGAACTAAAGTTCGATGCAAT
GTTAGAAATGGTCTTCAGTTTCTAAGTTTTGACCTGCCTCAGCGAGAGAG
TAACCATGACTAGATAAAGTGAACATTGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_p10.b1 MSMg01no157_p10.b1 CHROMAT_FILE:
MSMg01no157_p10.b1 PHD_FILE: MSMg01no157_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:25 2005
         (313 letters)



>mm_chr18_86911139_86911852
          Length = 714

 Score =  505 bits (261), Expect = e-147
 Identities = 294/305 (96%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  cagaaa-atccaatccttttgcggatgctgttagatatggctctgaaacactgggtgtga 68
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 210 cagaaacatccaatccttttgcagatgctgttagatatggctctgaaacactgggtgtga 269

                                                                       
Query: 69  gttctgggaagcgaactctggtcctttccaagctagtatgctttaataatgccaaagcta 128
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttttgggaagcaaactctggtcctttccaagctagtatgctttaataatgccaaagcta 329

                                                                       
Query: 129 ttgaaggacccccgaagacagacccttactcaagtctcgggaatagcgcgcacccagcga 188
           |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||
Sbjct: 330 ttgaaggacccccgaagagagacccttaatcaagtctcgggaatagcgcgctcccagtga 389

                                                                       
Query: 189 gacactgagaccgaacttactgtaatcacacgaggaagtttattaaccgcgagaagacaa 248
           ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 gacactgagactgaacttgctgtaatcacacgaggaagtttattaacagcgagaagacaa 449

                                                                       
Query: 249 gacaagagctcaaaccagcatgttagggctgagactcatacaccatgcaggggtagagga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gacaagagctcaaaccagcatgttagggctgagactcatacaccatgcaggggtagagga 509

                
Query: 309 gtttg 313
           |||||
Sbjct: 510 gtttg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)