Query= MSMg01no157_p19.b1 MSMg01no157_p19.b1 CHROMAT_FILE:
MSMg01no157_p19.b1 PHD_FILE: MSMg01no157_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:26 2005
(604 letters)
>mm_chr18_47159248_47160251
Length = 1004
Score = 980 bits (507), Expect = 0.0
Identities = 582/617 (94%), Gaps = 16/617 (2%)
Strand = Plus / Plus
Query: 4 ggaattctgtcttttgtcttgaaacctgttaatgggacttacctttgaggtttttgtttt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggaattctgtcttttgtgttgaaacctgttaatgggacttacctttgaggtttttgtttt 247
Query: 64 actttctaattttttcctttctagttctgtgtgtgtgtgtgtgt---------------- 107
||||| | | |||||| ||||||||||| | | | | | | | |
Sbjct: 248 actttatgagtttttcatttctagttctctctctctctctctctctctctctctctctct 307
Query: 108 gtgtgtgtgtatgtctgattctatttctttgttaaattctatttcatgtcttgaagtatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgtgtgtgtatgtctgattctatttctttgttaaattctatttcatgtcttgaagtatt 367
Query: 168 ttccattatttcattcggctgtttatgttttcatgaagacatttatttacatttccccta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttccattatttcattcggctgtttatgttttcatgaagacatttatttacatttccccta 427
Query: 228 atggctcttgagcatacataattgctgttttgtagtgcttcagctaaatggcttttctca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atggctcttgagcatacataattgctgttttgtagtgcttcagctaaatggcttttctca 487
Query: 288 tggcctgttgcagtaggctggcttcctttgtttgtgtttttacactggaatctaggcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tggcctgttgcagtaggctggcttcctttgtttgtgtttttacactggaatctaggcatc 547
Query: 348 tgggtaaagatatctgaggtatctggctcttgttggatgaggtcttttggttgccattgc 407
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 548 tgggtaaagatatctgaggtatctggctcttgttgggtgaggtcttttggttgccattga 607
Query: 408 ccattctgggtctgagccagagtgtgtctgtcagcttgggttccctggaagaaagtggtt 467
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 608 ccattctgggtctgagccagagtgtgtctgtcagcttggattccctggaagaaagtggtt 667
Query: 468 ctgttggttagatggagtcacaaggatgggtatggtttagaggcaatggctgaaaggact 527
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 668 ctgttggttagatggagtcacaaggatgggtatgggttagaggcgatggctgaaaggact 727
Query: 528 ggcagaagaacttgagggactaaggaccttaagtctgcaccaagaggctgagtcccaagg 587
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 728 ggcagaagaacttgagggactaaggaccttaagtctgcaccaaaaggctgagtcccaagg 787
Query: 588 ggatgaggtgagctgga 604
|||||||||||||||||
Sbjct: 788 ggatgaggtgagctgga 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_p19.g1 MSMg01no157_p19.g1 CHROMAT_FILE:
MSMg01no157_p19.g1 PHD_FILE: MSMg01no157_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:26 2005
(287 letters)
>mm_chr18_47309029_47309715
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 tgacaaaatggggaacaacaactccactcaaatcagcagagaaaacacaattaggcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgacaaaatggggaacaacaactccactcaaatcagcagagaaaacacaattaggcaaag 428
Query: 61 caaacagagctgaaggagcggtaggcaagccaagtgtccaggagcccacctgcaatgcgt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caaacagagctgaaggagtggtaggcaagccaagtgtccaggagcccacctgcaatgcgt 368
Query: 121 ttccaggagcccctcagaaaccatacccttataatgggggacagatggaagctcccaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttccaggagcccctcagaaaccatacccttataatgggggacagatggaagctcccaccc 308
Query: 181 agaaaagggggtctcccagagcatagctaatcaagacagacactatgccaggggccggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agaaaagggggtctcccagagcatagctaatcaagacagacactatgccaggggccggag 248
Query: 241 gagtaggaagagagggatgtatttgtgttccaccctatggtctccag 287
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 247 gagtaggaagagagggatgtatttgtgttccaccctacggtctccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
