BAC Information

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BAC

Clone NameMSMg01-158N01
Chromosome18 (Build37)
Map Location 36,272,683 - 36,366,493
singlet/doubletdoublet
Overlap geneLOC100042150
Upstream geneCtnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2
Downstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158N01.T7 (MSMg01no158_n01.b1)MSMg01-158N01.TJ (MSMg01no158_n01.g1)
ACCAG358922AG358923
length737869
length of high quality
(start - end)		316 (46 - 361)191 (77 - 267)
definitionCHROMAT_FILE: MSMg01no158_n01.b1 PHD_FILE: MSMg01no158_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:24 2005CHROMAT_FILE: MSMg01no158_n01.g1 PHD_FILE: MSMg01no158_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(36,272,683 - 36,272,991)(36,366,303 - 36,366,493)
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTAGTCTAGGACTTTAAGGTGCCTCCTGAAGTTCTCTGGGACA
GGGACACCAACCCAAGCTTCTGAAAGTGCAGTTTAATTCACCTCAGACAC
ACCAAGCCTGTCTCCATCTCTGGCTAGCCTCGGCCTCCAGCTGAGGATCC
AGCAGAGTACTCTAGAGTGGGGAAGGAAAGACAGAGCCGGTCTGCAAAGC
TGTAGTCACCTTGCTCTTGAATGACTCTGGACAGAACAGGGTGGGGTCAG
CTCCAGCGTCCCCAGGAAGGGGCTGCTAGGGGCTGTGGCCTTGGAGATTT
TTTTCATGTATTTTTAAGTCCTCGAACCTGAAACCTTTTGATTCTCAAAG
TGCAGAGCACATACCGCCCCCCCCTCATATTAATAAGCACTAATTACTAG
CCAAGCTTGAAGTCTTTGGAGCTGTCTGGCAGTCCTTCGAGCTGACCCAG
AAAACATAACCACGTTGCCATTTCTTCTAACTGCCACGGATTTTGCGTGC
GACCGCCTGCGCCTGCCCGCCTTCCTCCCTCCCCCCCCCTTTTTCTTCCC
CCCCCTCCCCCCCCTTTCTACCTCCCCTTTTCCTCCCACTCCTCTCCCCC
CCTTTTTCCCCCCACCTTTCTCTACCCCCCCCCTCCCCCAATTCCCCTTC
CCCCCTTCTCCTCCCCCCTATTTCTCCCCCCCTCTCT

CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGATAATTCATATAGAAAAC
CCAACCTAACAATGGAAAGGCAAGGATTCTGCAGGAAAGCACACGGGGAG
AAAACGGGCATTGATCCTCATGTATCCCAGAGTCGGGGACTCGTCTACAA
GTACAGTTTGCCTGACTGTCCTCCTTCCTTTCTTCTTTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCGCCNNNNNACCCATTTCCAAAAATCATATTCT
CAACTCCCTTTTACTCCAAATCCTCTATTTTTTTTATCCATAATCACAAC
CAAAAAAAATAAAAAAAAATTTTTTTTTTCCCCCCCCCCCCCCCCCCAAA
AAAAGAATTTGGGGTTTTAAATTTATTGAAGGTCCCCCCCCCCCAAAAAA
AAAAAAAAATTCTCTCGGGGGGGGTGTTTCTTTCCTTCTTGTCCCGTAGC
ACGTAGAACTTTATCCTCTATCCCCGTGGTACTACCCTGCAATCGTATTT
CACATTTTATTTGCACGCTAGATCATGCTAGTCGATTAATTAATTTCCTG
ATTTCGTCCCATTTCTACTCTTCCTTGTGTGGCAATAGCTTTGGATATGT
CACTCTTTTACGCAAGTTCTGGGCGAACAAACATAATACCATGATCCTCT
TCTGCTCTATCGATCGCGTGCGTGGCTGTTAGGACTCCTTTGTCATGATT
CCTTACAATATACATCTTTGTACTTATATTCGATCGGTCGGTCGTAGCTG
ATTACTTAATCCGGTAATTCACTCCGCGTTTCTCCATTGTAATTCCGCAG
GTAATGTAAACACCTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_n01.b1 MSMg01no158_n01.b1 CHROMAT_FILE:
MSMg01no158_n01.b1 PHD_FILE: MSMg01no158_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:24 2005
         (316 letters)



>mm_chr18_36272479_36273194
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctagtctaggactttaaggtgcctcctgaagttctctgggacagggacacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctagtctaggactttaaggtgcctcctgaagttctctgggacagggacacca 264

                                                                       
Query: 65  acccaagcttctgaaagtgcagtttaattcacctcagacacaccaagcctgtctccatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccaagcttctgaaagtgcagtttaattcacctcagacacaccaagcctgtctccatct 324

                                                                       
Query: 125 ctggctagcctcggcctccagctgaggatccagcagagtactctagagtggggaaggaaa 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ctggctagcctcggcctccagctgaggatccagcagagtattctagagtggggaaggaaa 384

                                                                       
Query: 185 gacagagccggtctgcaaagctgtagtcaccttgctcttgaatgactctggacagaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacagagccggtctgcaaagctgtagtcaccttgctcttgaatgactctggacagaacag 444

                                                                       
Query: 245 ggtggggtcagctccagcgtccccaggaaggggctgctaggggctgtggccttggagatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 ggtggggtcagctccagcgtccccaggaaggggctgctaggggctgtggccttggaggtt 504

                    
Query: 305 tttttcatg 313
           |||||||||
Sbjct: 505 tttttcatg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no158_n01.g1 MSMg01no158_n01.g1 CHROMAT_FILE:
MSMg01no158_n01.g1 PHD_FILE: MSMg01no158_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:24 2005
         (191 letters)



>mm_chr18_36366148_36366738
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgataattcatatagaaaacccaacctaacaatggaaaggcaaggattctgcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagatgataattcatatagaaaacccaacctaacaatggaaaggcaaggattctgcagga 287

                                                                       
Query: 61  aagcacacggggagaaaacgggcattgatcctcatgtatcccagagtcggggactcgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aagcacacggggagaaaacgggcattgatcctcatgtatcccagagtcggggactcgtct 227

                                                                       
Query: 121 acaagtacagtttgcctgactgtcctccttcctttcttctttcctccctccctccctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 226 acaagtacagtttgcctgactgtcctccttcctttcttctttccttccttcctctctccc 167

                      
Query: 181 tccctccctcc 191
           |||||||||||
Sbjct: 166 tccctccctcc 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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