Query= MSMg01no159_l17.b1 MSMg01no159_l17.b1 CHROMAT_FILE:
MSMg01no159_l17.b1 PHD_FILE: MSMg01no159_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:30 2005
(584 letters)
>mm_chr18_46780877_46781860
Length = 984
Score = 1015 bits (525), Expect = 0.0
Identities = 569/589 (96%), Gaps = 12/589 (2%)
Strand = Plus / Minus
Query: 5 cattagcactggccggtaagcagagcaatcagacgccctctgcctgattgtatctaagta 64
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 718 cattagcactggcaggtaagcagagcaatcagacgccctctacctgattgtatctaagta 659
Query: 65 cccaagcaagttcctcagccgccactaaaagccaagcagaggagtaacggctttctggcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cccaagcaagttcctcagccgccactaaaagccaagcagaggagtaacggctttctggcc 599
Query: 125 atccacccttcagtgctactgatgaagtccagacatgatcttcatgagtctagagatttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atccacccttcagtgctactgatgaagtccagacatgatcttcatgagtctagagatttg 539
Query: 185 caatcttggtttcgccctccacacaactgt-tctccgtttttcacagttgtcactactcg 243
|||||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||
Sbjct: 538 caatcttggtttcgccctccacacaactgtgt-tccgttttccacagttgtcaccactct 480
Query: 244 gagactctctggaggccgctgctgaggatacaggaaatgctcttcctgaaaggccaccgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gagactctctggaggccgctgctgaggatacaggaaatgctcttcctgaaaggccaccgg 420
Query: 304 ctacttgaccctggactcgtgtgtttacacaatcccaagagtagctaataaagcacactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctacttgaccctggactcgtgtgtttacacaatcccaagagtagctaataaagcacactg 360
Query: 364 ctgcccacttatacattgatgctgtttcatttctgcccacatagatttaacctctgttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgcccacttatacattgatgctgtttcatttctgcccacatagatttaacctctgttcc 300
Query: 424 ctttgcagaaaagaaagaatattttctctcctccaccccactgccttaacatttcaattg 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 299 ctttgcagaaaagaaagaatattttctctcctccaccccactgcgttaacatttcaattg 240
Query: 484 ttcccactgagagatcacagcgatggggggggggg--------caaagtaactcaggccc 535
|||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 239 ttcccactgagagatcacagcg--ggggggggggggggggaggcaaagtaactcaggccc 182
Query: 536 tgttgctcccaccctcctaccgtctgggttctcaccctcccaccgtctg 584
||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 tgtagctcccaccctcctaccgtctgggctctcaccctcccaccgtctg 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_l17.g1 MSMg01no159_l17.g1 CHROMAT_FILE:
MSMg01no159_l17.g1 PHD_FILE: MSMg01no159_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:31 2005
(285 letters)
>mm_chr18_46650738_46651424
Length = 687
Score = 505 bits (261), Expect = e-147
Identities = 280/287 (97%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 1 tattgagaatttcagtataaaaatggcctccagtcagccctgattt--gagacagtaaat 58
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tattgagaatttcagtataaaaatggcctccagtcagccctgatttatgagacagtaaat 260
Query: 59 gccttagtgacttcaatagaagtaacggagcggagtttgaaatgagaatcacagataagc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttagtgacttcaatagaagtaacggagcggagtttgaaatgagaatcacagataagc 320
Query: 119 agacatagagatactcaataaagacacaaaaaaagttcaagcacgcaactaaccttgaaa 178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacatagaaatactcaataaagacacaaaaaaagttcaagcacgcaactaaccttgaaa 380
Query: 179 gacaaggccttaagcttaaaacttaaaaagaatgcaaagccaatgcctaagtacggtcag 238
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 381 gacaaggccttaagcttagaacttaaaaagaatgcaaagccgatgcctaagtacagtcag 440
Query: 239 gaccagcctcaccaacagcgtcagaggagatgcaaatggctggcaag 285
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gaccagcctcaccaacagtgtcagaggagatgcaaatggctggcaag 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 687
Length adjustment: 9
Effective length of query: 276
Effective length of database: 678
Effective search space: 187128
Effective search space used: 187128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
