BAC Information

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BAC

Clone NameMSMg01-160K24
Chromosome18 (Build37)
Map Location 12,850,795 - 12,851,080
singlet/doubletsinglet
Overlap gene2810439F02Rik
Upstream geneRbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3
Downstream geneCabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379, LOC100040358, Zfp521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K24.T7 (MSMg01no160_k24.b1)MSMg01-160K24.TJ (MSMg01no160_k24.g1)
ACCAG360290AG360291
length709755
length of high quality
(start - end)
323 (45 - 367)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no160_k24.b1 PHD_FILE: MSMg01no160_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:43 2005CHROMAT_FILE: MSMg01no160_k24.g1 PHD_FILE: MSMg01no160_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCCCAAGGTCTTGCTAAGGACAAACTAGGACTGTTGGAATACT
GGCGGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATGA
TAGGAAAATATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCG
GGAATGGAACACGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTAGA
CTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTT
AAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCATTTCTC
CCTTCCTTTTTTTATATTTCCACCCGACCTTCCAGGATGTCCTGCCTTGT
CGTAGCTACAGACCTCCCGACCACTCTAAAGATGAATGGAAACACAACGA
TTACTAGTAAAACAATGTCAAAAATAATAACAAGTAGGAATATATATTGA
ACCCAATCCAGGGGGTTCAATGCACTTAGGTTGTTTTTCAAATCTCTAGC
CAATTCATCAATGTTCCAAGTGTCCAAATGACTTTTACTAATATCTGACA
TTTCTGCCTTTAACTGTTTCAAGTCATGAGAAATATCTGTCCATATTCCC
TGCAAATGAGCTTTATAAGGTAAGGGGGTAACACAAATGTACTGTAAAGA
AGCATGACT
AGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGCTGAAGTGTTTCTAGAT
GGGCAGGCAGTGTGAGCTAAGACACAAGCTTCCAGGTCCTTTCAAAGAAG
CTTGAGGAATGCGCATGCAGAATGCCAGGAGGGGGCTGTTCCGACCTGCC
ACGGGAGAGGGACTTGGCTCTATCTCACTGGTGATACAGGCCAGCTAAGT
GTTTGAAGCATGGGTGGACCACATCCTGGTTTGTCTCCAGGAGCCTTGAG
TGGGGCTAGTGACACTGGCAACACAAAGCATGTCAGGAAAGGTCCGAGAA
ACCTGCACTGTGAGGCTACCACCGCGCCACCACAAACAGCCAGACTGAGG
GGCAGAGAAAATGTCGCACCAGGACTCACTGACAAAGAAGGAAGATGTGG
TTGTCTCCCTTGGAGAGAAGAAGAAAGGAAGGGAGGAAGGGAGGGAGGTA
GTCTATTTATTTTTTCTCTCTCCCTTATTAGATCTAAAACCTTTTCGTCC
CTACTCTTCATTCCACTCCCCACCCTTCTTCCTCCCTTTAATACTTATTC
ACTCGATTCCCTAACCACTATTATTATCCCCCCCTCTCATTTCCCTCTTC
CCCACTCCCTCATACCACCTATTTATTATAGTCGTTCCTTCCCCTTATAT
TCAATTATAAATCAATCCCTACTATTTACTATTCTGTTTCGTTGTGTTAT
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k24.g1 MSMg01no160_k24.g1 CHROMAT_FILE:
MSMg01no160_k24.g1 PHD_FILE: MSMg01no160_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:43 2005
         (286 letters)



>mm_chr18_12850595_12851280
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagctgaagtgtttctagatgggcaggcagtgtgagctaagacacaagcttccaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggagctgaagtgtttctagatgggcaggcagtgtgagctaagacacaagcttccaggtc 427

                                                                       
Query: 61  ctttcaaagaagcttgaggaatgcgcatgcagaatgccaggagggggctgttccgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttcaaagaagcttgaggaatgcgcatgcagaatgccaggagggggctgttccgacctg 367

                                                                       
Query: 121 ccacgggagagggacttggctctatctcactggtgatacaggccagctaagtgtttgaag 180
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 ccacaggagagggacttggctctatctcactggtgacacaggccagctaagtgtttgaag 307

                                                                       
Query: 181 catgggtggaccacatcctggtttgtctccaggagccttgagtggggctagtgacactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catgggtggaccacatcctggtttgtctccaggagccttgagtggggctagtgacactgg 247

                                                         
Query: 241 caacacaaagcatgtcaggaaaggtccgagaaacctgcactgtgag 286
           |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 246 caacacaaagcatgtcaggaaaggtctgagaaacctgcactgtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)