BAC Information

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BAC

Clone NameMSMg01-161G01
Chromosome18 (Build37)
Map Location 4,548,167 - 4,548,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
Downstream geneLOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161G01.T7 (MSMg01no161_g01.b1)MSMg01-161G01.TJ (MSMg01no161_g01.g1)
ACCAG360797AG360798
length1,1451,212
length of high quality
(start - end)
277 (481 - 757)---
definitionCHROMAT_FILE: MSMg01no161_g01.b1 PHD_FILE: MSMg01no161_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:55 2005CHROMAT_FILE: MSMg01no161_g01.g1 PHD_FILE: MSMg01no161_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGCCTNTNNNNAGCCTTTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGCTTGATCAGNAACCAATTAGNGGCAAGANNANNNN
AGGNNNNGGAAGNNNAACACCTTAAAAAACANGNANGNNGGNNCNNCNCA
NAGAGNNNAAAGGNNGGGAAAAAGGANNAAGAAAGAGAGAAACCCCAAAN
GCCCNNGAAAGGAGGGNCACGGNCANGGGCANGGGCCANGGAAANAGCCN
CNCAAGGGGAACACAGNANACAGNGGCNNCNNNCCCNNAGCCCGGCAGGG
GAGNAGGAAANANNCNACNNCAAAACGGAGGGANNCANCCTAANNNNCCN
GAAGAGCNNCNCCAGAGANNGGGNNNANGGAAAACAAACNCCANNNNNAG
GAAAGANCATTTTTTTTTATAAANGCCNGAGCTGANAGCACATGCTAAGA
GANNCTGACAGTCAGTATGATAATCTCCAGGAGTAGGATGTGTTGGGAAT
TGGATTTTGCTTTTCCCTATCTCACTTTTTAAAAGATGCATGCTCAATGC
CCACAGAATCTCTGTTGGCATCTCCCTCCCAGATTGCTTATCATTCTGGA
TTGATTTGTTCTGGCCCAAGCATTGCATTTAGGGCAGAGATGTGCACACG
ATGAGATCATGTTATAAAATCCAAGAGCAAAAATTCCTTTCTCCACGATC
ATGTCCTTCCTCAGTCACTTAGGGGCTGCTGTTGATAATGTCACACATGA
AGAGCTTTCCACTGATATTTGAGGTATAACCTTAGGAATGTATTCAGCCA
TTTCCACTTAACATTACAAAGATGACCCAGGGTCATACAGAGCATCCATC
TGACTCTTCTCCAGAAACCAGAGCTCAGCAGTCACATAGTGACTCATGCA
AGTTTGCCTTATCAATGAACCAGGGTATCTTGTGAGACCGCTGGGGTGGG
TTCATCCAAAATGAGGAAAAAGGGGGCCTACTGTGGCTTCATTCTTTTTA
AAGGCGAAAAAAAAAAATTTTTAAAAAAAAAACCCCCCCAATAATGGGAG
CTTTTTCCCCCACCCCACAGGGGAAAAAAATAATTTTTTATAAGGGGAAG
AAGACCCTAGCAAAATTGGGAAATTTCCTAACCCTACGATTGTGT
NNNGGTAGAAGGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAAGGGGTGGAACCAGTTGGCACCCCCAC
CAGCAGGGAAGAAGGGTTCCTCTTTCCCCACATCCTCACCAGGGCCGGTG
GCCACCGGGGGGTTTGATCTTACCCATTCTGACGGAGGGGAGGGGAAATC
CCAGGGTGGTTTTGATTTACATTTCCCAAATTATAAAGGATTTTGAACAT
TTTTTAAGGGGCTTCTCAACCCTTCGGAATTCCTCAGTTGAAAATTCTTG
GTTAAGCTCTGAACCCCATTTTAAAAATAGGGTAATTGGGTTTTCAAAAG
CCAAACTTCTGGAGTCCTAATAATATATGGAAAATAACCCCCCAATCAAA
TTTAGAATGGGAAAAAATTTTTTCCCAATCGGTGGGGGGCCTTTTTTGTT
TTTTTTCCCCCCCCCCTGGNNTAAAAAAAGTTTTAAAAAAAAAAAAGGTC
NNTTTTGTNAATTCTTGATTTAANAGAAAAAGCCATGGCTGTTCTGTTTA
GAAATCTTTCCCCGGGGTCCATATCTTTAAAACTCTTTCCCACTTTCCCC
TCTATAAGTTTCAGGGCCTCGGGTTTTATGGGAAGTTCTTTGATCCACTT
AAACTTGAGCTGAACAAGAAAATAAAAAAAATGCACCAATTTACATTCTT
CTACTTGATAACCGCCAGTTGATCCAGCACCACTTGTTGAAAAGGTTGCC
TTCTTTCCACTGAAGGGTTTAAGTTCTTTTGTCAAGAATCAAGGGACCAT
AATGGTGGGAATTCATTTCGGGATCTTCAATTCGGTTCCTTCGATCTACC
TGTCGGCCATTATACCAGTACCATGGAGTTTTTATCACAATTGTTCGGTA
GAAAACTTGAAACCCGGGATGCGGATTTCCCCCCAAAATTTTTTTTTTGT
GTGAAAAAATATTTTGTTATCCTAAAAATTTTTGTATCCCTACAAAAAAT
TTGCAAATTGCCCTTTCTATTTCTGGGAAAAAAAATAAACTGCATTTTTT
ATAGGGTATTCTCTGTTATCCATAATTTATCTTTTGGGCTAAAAAACATT
CTTTTTTTATATAAAACCACTACCTCTTATTAATTAGAAAAATAATATAT
ATTCCTAAAAACTCTTCACATCTTATTTATAATTACTTGGAATCTCTTAT
CCATAATATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_g01.b1 MSMg01no161_g01.b1 CHROMAT_FILE:
MSMg01no161_g01.b1 PHD_FILE: MSMg01no161_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:55 2005
         (277 letters)



>mm_chr18_4547967_4548643
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtaggatgtgttgggaattggattttgcttttccctatctcactttttaaaagatgca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtaggatgtgttgggaattggcttttgcttttccctatctcactttttaaaagatgca 260

                                                                       
Query: 61  tgctcaatgcccacagaatctctgttggcatctccctcccagattgcttatcattctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcaatgcccacagaatctctgttggcatctccctcccagattgcttatcattctgga 320

                                                                       
Query: 121 ttgatttgttctggcccaagcattgcatttagggcagagatgtgcacacgatgagatcat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 321 ttgatttgttctggcccaagcattgcatttagggcagagatgtgcacacgacaagatcat 380

                                                                       
Query: 181 gttataaaatccaagagcaaaaattcctttctccacgatcatgtccttcctcagtcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttataaaatccaagagcaaaaattcctttctccacgatcatgtccttcctcagtcactt 440

                                                
Query: 241 aggggctgctgttgataatgtcacacatgaagagctt 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggctgctgttgataatgtcacacatgaagagctt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)