BAC Information

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BAC

Clone NameMSMg01-162H03
Chromosome18 (Build37)
Map Location 34,894,108 - 34,894,395
singlet/doubletsinglet
Overlap geneCdc25c
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3
Downstream geneLOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162H03.T7 (MSMg01no162_h03.b1)MSMg01-162H03.TJ (MSMg01no162_h03.g1)
ACCAG361569AG361570
length708711
length of high quality
(start - end)
94 (49 - 142)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no162_h03.b1 PHD_FILE: MSMg01no162_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:49 2005CHROMAT_FILE: MSMg01no162_h03.g1 PHD_FILE: MSMg01no162_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTATGCTTTATTAGGATTCTAAAACTAAATATTTATTTGT
TTTGTTTCACTCGTCCTCCTCATCCTCCTCCTCCTCCTCCTCTACCACCT
CCGCCTACAGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAACGTTCGAGCGCTCTCTTGTTTGCGAAAATGACTG
CTTAACGG
NCTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCGAGAGAGGCCCTCGA
ATGTGAGTGTCTGCGTGAGCTGAAACCGCGGATGGAAACGGATCCTGAGT
GAGACGTGGCTCACCTGTTTGGACAGAGATGAACCTAAATGAATGCCGGC
CACTGCAGTTCCATGAGCATTAGGGTGATCGAAGGAAGGCGTTCTTACAG
TTCAAAAGAATTGGGCATTGGCGATATAACTCCGCTGGCAGAGTACTTGC
CTAGAATATTTAGTCCTTGGGCTTGATCCCCAGTATTGCATAAAGCTGGG
CGTAATTATACACCCCTATGATCCCACCCCCCCCCCGCAAGGGAGTCGTG
GTGTGTCAGGGATACACAAGCAGGAAGATCAGAAATTTAAGGTTCTAAAT
CAGTCTGAGCTAGAGATCCTGTCTCAAAAAAAAAAAAAAAAGATCCAGAC
ATTTGGTCCATGCCGATAATCCCAGCACTTAGGAGTCAGAGGCAGATAGA
TAACTGAGTTTGAGACCAGCCTGGTCTACATACTGAGACCCTGTTTCAAA
AACAAAACAAAGCAAAACAATAAAAAAACCCATGTAAAACACACACACAC
ACACACACACATTTATAAAGGGATTTGGGGATGAAGCTTCAATAGAGGAA
AGGGAAGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_h03.g1 MSMg01no162_h03.g1 CHROMAT_FILE:
MSMg01no162_h03.g1 PHD_FILE: MSMg01no162_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:49 2005
         (288 letters)



>mm_chr18_34894013_34894700
          Length = 688

 Score =  464 bits (240), Expect = e-135
 Identities = 276/288 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccgagagaggccctcgaatgtgagtgtctgcgtgagctgaaaccgcggatggaaac 60
           ||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||
Sbjct: 383 tcctccgagagaggccctcgaatgtgagtgtctgcatgagttgaagccggggatggaaac 324

                                                                       
Query: 61  ggatcctgagtgagacgtggctcacctgtttggacagagatgaacctaaatgaatgccgg 120
           ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 323 ggatcttgagtgagacgtggcacacctgtttggacagagatgaacctaaatgaatgcctg 264

                                                                       
Query: 121 ccactgcagttccatgagcattagggtgatcgaaggaaggcgttcttacagttcaaaaga 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 263 ccactgcagttccatgagcattagggtgatcgaaggaaggtgttcttacagttcaaaaga 204

                                                                       
Query: 181 attgggcattggcgatataactccgctggcagagtacttgcctagaatatttagtccttg 240
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attgggcattggcaatgtaactccgctggcagagtacttgcctagaatatttagtccttg 144

                                                           
Query: 241 ggcttgatccccagtattgcataaagctgggcgtaattatacacccct 288
           ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 143 ggcttgatccccaatattgcataaagctgggcgtaattatacatccct 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)