BAC Information

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BAC

Clone NameMSMg01-162M19
Chromosome18 (Build37)
Map Location 79,011,017 - 79,160,325
singlet/doubletdoublet
Overlap geneSetbp1
Upstream geneAtp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M19.T7 (MSMg01no162_m19.b1)MSMg01-162M19.TJ (MSMg01no162_m19.g1)
ACCAG361812AG361813
length675714
length of high quality
(start - end)
235 (128 - 362)155 (77 - 231)
definitionCHROMAT_FILE: MSMg01no162_m19.b1 PHD_FILE: MSMg01no162_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005CHROMAT_FILE: MSMg01no162_m19.g1 PHD_FILE: MSMg01no162_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,160,095 - 79,160,325)(79,011,017 - 79,011,171)
sequence
NNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGTGTCGACAGCCTCCGACTTACGATGGCCCTGGAT
CCCATTTCCCTATATTGCTTAGCCCCCAAAATCTGTGCAAGTGCAGTACA
CAGCTATCTTAGAATTTTTAATTCTGCCCCAACACAGTGTAGCACCGCGA
TATGTATTTAAGGATGTTCGCAGTGTCAGCAGGCCACAGCTTCTAGTGGG
AACATAGTGGGAACACAGAGGCTCCCCCACAGTGTGGTCTCCTGCTAAGC
TATGGGGTTTTCCAGTTCAAAGCATTGAATGCAGTTTTCTTTTCTGTTTT
TTTTTTTTATTTTTTCACAGCCCACCGAGCGTCACTCGAGTATAGTTATC
TGCAGTTAGCAGTTAGTCCATATAACTGATGGCTTACTCTCAGTTTTCCC
TTATACGTAAAAGCTCCCAGGGGCCCGAAGGCTGGCTTCTTAGACTGTAT
CCTCACCATGGAGTCTGTACCTAAGAGAAGTGTTAAGGCAGTGCTCCTCA
ACCTTCTTACTGCTGTGGCCCTTTAACACAGTTCCTCAGGTTGTGGGGAC
CCCACCCATAGCATTATGTTCTTGTTACTTCATAACTGGAATTTTGCTAC
TGTTATGAATTTTAATGTAAATATN
NAATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGACCAGGCCTGTGCTTTCAA
AACAGGGCCATGTGCTGGGGAGGAATGCCGTGTGCTTAGTCTTGTTTATA
ACATGGTAGAGGGTGCAAGAATGTGATCTGCAGAGACGGAGAGAGAGAGA
GAAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGNNNNNTNNTTTTTTTTT
TTTTNNNTTNTNNTNTNNTNTTTTTTTTTTTTTTTTTCTTNNCNNNNNNN
NNNNNNNNNNTTTTTTTTTTTTTTTNGNGGGGGNGGGGGGGNGGGGNNGG
GGGTTTTGGGGTGGGGCTCCAAAAACAAAAAATCTGTTTTTTTTTTTTTT
TTTGNGTTGTTTTTTGAAAAACACTTTATCCTAAAAAGGGGGGGGGGGGG
GGGTGTCTTTTCCTCCTCTTTCCTCTCCTCGTTGCGTTTTTTTTTCTTTT
GTGGTTTTTATTCGGCCCTTTTGTCTTTCGTTTTTCTCTTGTTTCGGGCG
TTTTCTGTTGTCTTGTTGTCTTTTGTTTTCTATGTCTTTACTATTTGCAC
TCTATCCCTGCCCTTCGAGATTAGGCTTCGAAACACATTGCCCTCATCTC
TACGCCTCTCCTTTTTTTTTATTCTCTTCTTTTGATGGTATTATATCTCC
ACTACTCATTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m19.b1 MSMg01no162_m19.b1 CHROMAT_FILE:
MSMg01no162_m19.b1 PHD_FILE: MSMg01no162_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (235 letters)



>mm_chr18_79159895_79160529
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatctgtgcaagtgcagtacacagctatcttagaatttttaattctgccccaacacag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 431 aaaatctgtgcaagtgcagtacacagctatcttagaattttgaattctgccccaacacag 372

                                                                       
Query: 61  tgtagcaccgcgatatgtatttaaggatgttcgcagtgtcagcaggccacagcttctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtagcaccgcgatatgtatttaaggatgttcgcagtgtcagcaggccacagcttctagt 312

                                                                       
Query: 121 gggaacatagtgggaacacagaggctcccccacagtgtggtctcctgctaagctatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggaacatagtgggaacacagaggctcccccacagtgtggtctcctgctaagctatgggg 252

                                                              
Query: 181 ttttccagttcaaagcattgaatgcagttttcttttctgtttttttttttt 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttttccagttcaaagcattgaatgcagttttcttttctgtttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no162_m19.g1 MSMg01no162_m19.g1 CHROMAT_FILE:
MSMg01no162_m19.g1 PHD_FILE: MSMg01no162_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (155 letters)



>mm_chr18_79010817_79011371
          Length = 555

 Score =  292 bits (151), Expect = 6e-84
 Identities = 154/155 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaccaggcctgtgctttcaaaacagggccatgtgctggggaggaatgccgtgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaccaggcctgtgctttcaaaacagggccatgtgctggggaggaatgccgtgtgct 260

                                                                       
Query: 61  tagtcttgtttataacatggtagagggtgcaagaatgtgatctgcagagacggagagaga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tagtcttgtttataacatggtagagggtgcaagaatgtgatcttcagagacggagagaga 320

                                              
Query: 121 gagagaaggagagggagagggagagggagagggag 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagaaggagagggagagggagagggagagggag 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)