BAC Information

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BAC

Clone NameMSMg01-162N13
Chromosome18 (Build37)
Map Location 58,010,359 - 58,010,641
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneSlc12a2, 9330166H04Rik, Fbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N13.T7 (MSMg01no162_n13.b1)MSMg01-162N13.TJ (MSMg01no162_n13.g1)
ACCAG361845AG361846
length834711
length of high quality
(start - end)
131 (72 - 202)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no162_n13.b1 PHD_FILE: MSMg01no162_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:19 2005CHROMAT_FILE: MSMg01no162_n13.g1 PHD_FILE: MSMg01no162_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCAGAAACCTCAAAAGTTTTAACGACAATGCTCCTCAAACT
ATTCCGTAAGATAGAAAGGTTTGACATCTTCCCTATACCAGGTTTTTTGT
TTTGTTTTGGGTTTTTTTGGTTTTTTGTTTTGTTTTGTTTTTGGTTTTTG
GATACTCCTAACCAACATACTCCATTCTTTGACAACTTTTATATCCATTT
CATTTTTCTCTCACCTTATTTTATCCCCTCCCCCCTCATCCTCTTTCACG
ACTGTTTTACGGACGACCAACATATTTTTTTTCCCTAAAATAATCCCACA
CCAATTAAACGAAAGTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCC
CGCATATATTTTCACCCATGCGATCACATTTTTGTTTTTTTTCCCCCCAC
AAAAAAAAAAAAAAAATTTGTCGCGTGGCGGGTGGGTCACCTTTATCTTT
TCCCAACCCAAAACTTAATCAAACTGGCTCCCATCCACCCGTCCCATATT
GTACTTTACCCCATTATTTCTTTTTCTCCACTGCACCACTATTCTGGTGT
ATTTACCCCGGGTCCCTTTCCCATCTATATTATTCTATTTTCTTTTCCCC
TTTAATATTTCCCCTAACATTAACGTGCGTGAACGTCGACAAATCATCTT
TCGACCACTACCTTTTTCCCTTCCCCTTCCTTTTTTCTTTTCTTCTCTCT
GTATAAGTAATCCTTTATAACCTATTTCCCTCTACCCTAAAATCTCCCCG
TTTTATTCCCTCATTTCGTTTCCACCATTTCTAC
ATCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAATAACGGGTAACAGATAGCCAC
ACAGAACCCTTGCTTCTTTAGACCCCACCTGCTTCTCTGTCTTCTTTATG
TCCGTAAATGGTGTCTCCTTCTAACCCCTCGTTATTCATTAGACTCTGTG
TTGCTATGATAAATACCTGAAAAATATCAACTTAAGGAGAGGAAAGATTT
GCTTTCCTTGTGGTTGAGGAGGTATCGATCTGTGGTTGCTCGGGCCCCTG
CGTTTGGGCAGACCATCGTGATGTTAGGGACATGTGGCAGCGGAGCGTCT
TCTCTTGAATCAGTAAGTCTCTGAGGCTGNAGCCCCTAGTGACCTACTTC
TGTCAAGATGGCCCTACTCCCAGAAGAAAAAAAAAAACAGCGCTGTCTTA
TCACGAATCTATCAAAGGATTAATTCATTGAAAGGTTAGAGCCCTCAAGC
CTCCAATACATGAGGGCAATTCCTGTTCAAACAGCCCTGGCCCTTCAGAC
TTATTAATTATCAGTCAGCTCAGAAGTAGTAAGACAAACAAACAGAGACT
TAATTAAACATTAAAACTGTTATAAAAAGCATTTGCAACCTGATATCTGG
TTTTATTTCTTTAGCCACAACAATAACTTACTCTTACAAACCTGCGGCCA
ATCTCTACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n13.g1 MSMg01no162_n13.g1 CHROMAT_FILE:
MSMg01no162_n13.g1 PHD_FILE: MSMg01no162_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:19 2005
         (283 letters)



>mm_chr18_58010319_58011001
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaataacgggtaacagatagccacacagaacccttgcttctttagaccccacctgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaataacgggtaacagatagccacacagaacccttgcttctttagaccccacctgcttc 264

                                                                       
Query: 61  tctgtcttctttatgtccgtaaatggtgtctccttctaacccctcgttattcattagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgtcttctttatgtccgtaaatggtgtctccttctaacccctcgttattcattagact 204

                                                                       
Query: 121 ctgtgttgctatgataaatacctgaaaaatatcaacttaaggagaggaaagatttgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctgtgttgctatgataaatacctgaaaaatatcaacttaaggagaggaaagatttgcttt 144

                                                                       
Query: 181 ccttgtggttgaggaggtatcgatctgtggttgctcgggcccctgcgtttgggcagacca 240
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 143 ccttgtggttgaggagggatcggtctgtggttgctcgggcccctgcgtttgggcagacca 84

                                                      
Query: 241 tcgtgatgttagggacatgtggcagcggagcgtcttctcttga 283
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 83  tcgtgatggtagggacatgtggcagcggagcgtcttctcttga 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)