BAC Information

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BAC

Clone NameMSMg01-163C12
Chromosome18 (Build37)
Map Location 17,547,436 - 17,547,743
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C12.T7 (MSMg01no163_c12.b1)MSMg01-163C12.TJ (MSMg01no163_c12.g1)
ACCAG362053AG362054
length702708
length of high quality
(start - end)
314 (50 - 363)284 (81 - 364)
definitionCHROMAT_FILE: MSMg01no163_c12.b1 PHD_FILE: MSMg01no163_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005CHROMAT_FILE: MSMg01no163_c12.g1 PHD_FILE: MSMg01no163_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCAGTATCCTACCCATTCTTACTCAATAGAAGCTATCTCA
TGAAAGAGGTCCTATGTACTTTGCAAGAGAGTTTTGTTAGTATGCTTATT
ACAAACCCTTCCTCCGTATGCCCTTATCTGCAGCACTGTTCCTCAGTGAA
TAGAACTCATGGAAAAGGTCACACATGCTGTAACAAAGATGCATTCTTTT
CAAAGAAGTTTCTACCTTGTCATGCCTAAAGCGTTGTGATAACTGTCAAA
TAGTAGCACCCACTTCATGTTTTACTGTGTTTAAATGTGTACAAAATAAA
CCTCTCAGTGTTATATTTCACACCCCCTGCCCCAGCACCAGCTAATTAAG
TAGAGCTGAACTGGAATTCCCTTCTTACTTTACCCCAGACTGTTTCACTG
CTGATCCTGACACTGGCAGGGACCCTACATGCAGTGCCTGTTGATGTTGG
AATTGGACATCAGGCCATCTGGATCAAGAGTTACCAATGGTTGTAAGCTG
TGGTTTGGGTGCTGGTACTCAAACCTAGATGATGATGTAGAAGAACAGCC
AGTGCTCACAACTGCTTCACCCATTCAGCCCCAGTATGGATCATTGTTAA
GCATTTTCTCTTTCATGAACAATAAAGTTGGTCACAAGAAGTGCCAACCT
GT
NCAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAACAGAACAGCAATGGC
TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA
GTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACA
GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC
CAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACC
CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAA
TACCGAATGGCAGATTATTTTCTGACCACCCCCGCCCAACATCCTCAATC
ATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGT
CAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGGGAGGAT
GTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTA
CAACCACTCTGGAAATCCGTCTGGTGGTTCCTCAGAAAATTGGACATAGT
ACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATG
CCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA
TTTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c12.b1 MSMg01no163_c12.b1 CHROMAT_FILE:
MSMg01no163_c12.b1 PHD_FILE: MSMg01no163_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:41 2005
         (314 letters)



>mm_chr18_17547149_17547862
          Length = 714

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagtatcctacccattcttactcaatagaagctatctcatgaaagaggtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattctccagtatcctacccattcttactcaatagaagctatctcatgaaagaggtcct 536

                                                                       
Query: 65  atgtactttgcaagagagttttgttagtatgcttattacaaacccttcctccgtatgccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atgtactttgcaagagagttttgttagtatgcttattacaaacccttcctccgtatgccc 476

                                                                       
Query: 125 ttatctgcagcactgttcctcagtgaatagaactcatggaaaaggtcacacatgctgtaa 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttatctgcagcactgttcctcaatgaatagaactcatggaaaaggtcacacatgctgtaa 416

                                                                       
Query: 185 caaagatgcattcttttcaaagaagtttctaccttgtcatgcctaaagcgttgtgataac 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 415 caaagatgcattcttttcaaagaagtttctaccttgtcatgcctaaagtgttgtgataac 356

                                                                       
Query: 245 tgtcaaatagtagcacccacttcatgttttactgtgtttaaatgtgtacaaaataaacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgtcaaatagtagcacccacttcatgttttactgtgtttaaatgtgtacaaaataaacct 296

                   
Query: 305 ctcagtgt 312
           ||||||||
Sbjct: 295 ctcagtgt 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)