Query= MSMg01no163_e09.b1 MSMg01no163_e09.b1 CHROMAT_FILE:
MSMg01no163_e09.b1 PHD_FILE: MSMg01no163_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:50 2005
(314 letters)
>mm_chr18_33367497_33368210
Length = 714
Score = 507 bits (262), Expect = e-148
Identities = 291/310 (93%), Gaps = 15/310 (4%)
Strand = Plus / Plus
Query: 5 gaattcatatgatcaattggcttcttagaaagcttaaaaccatacaaatgaaaaccatac 64
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 220 gaattcatatgatcaattggcttcttagaaagctt---------------aaaaccatac 264
Query: 65 aaatgaaacctgacttttacagtggtcatgtaataccatgtatgagttacaaaactgagc 124
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aaatgaaacctgaattttacagtggtcatgtaataccatgtgtgagttacaaaactgagc 324
Query: 125 atttacttacagatacccattaaactcttctgagggttttctccaaacggtcacatcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttacttacagatacccattaaactcttctgagggttttctccaaacggtcacatcttt 384
Query: 185 ctagaaaaacaaagacagtacatggtgatcgtcacataggtggttcagtgcttaactttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagaaaaacaaagacagtacatggtgatcgtcacataggtggttcagtgcttaactttg 444
Query: 245 cattcaaaaacaacgtaagcaatttttccgatacagtagtcactcatgtcataaagatac 304
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 445 cattcaaaaacaacgtaagcaatttttccgagacagtagttactcatgtcataaagatac 504
Query: 305 ctgcatttta 314
||||||||||
Sbjct: 505 ctgcatttta 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_e09.g1 MSMg01no163_e09.g1 CHROMAT_FILE:
MSMg01no163_e09.g1 PHD_FILE: MSMg01no163_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:50 2005
(287 letters)
>mm_chr18_33497041_33497727
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Minus
Query: 1 tcatccctgtacacttactcagctttcagaacgtctaagcactaacacttctaagcagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcatccctgtacacttactcagctttcagaacgtctaagcactaacacttctaagcagcg 424
Query: 61 cccctgtgcctggagctggtcattctgtagacaggttgtcagtgaatctggtggggaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cccctgtgcctggagctggtcattctgtagacaggttgtcagtgaatctggtggggaaag 364
Query: 121 accaggcttgaaactgacttgggaatgagatctgaactgtcctttcaaaatgtcatgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 accaggcttgaaactgacttgggaatgagatctgaactgtcctttcaaaatgtcatgcca 304
Query: 181 cttttgcaattatttctcaagtcaggagccttgggacaaataaatgtgaaccatttaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttttgcaattatttctcaagtcaggagccttgggacaaataaatgtgaaccatttaaac 244
Query: 241 aacactgccataagttataggcatcacagctgtaaccttgcgg 283
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 243 aacacagccataagttataggcatcacagctgtaaccttgcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
