BAC Information

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BAC

Clone NameMSMg01-163F06
Chromosome18 (Build37)
Map Location 7,219,201 - 7,219,885
singlet/doubletsinglet
Overlap geneArmc4
Upstream geneKif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778
Downstream geneMpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163F06.T7 (MSMg01no163_f06.b1)MSMg01-163F06.TJ (MSMg01no163_f06.g1)
ACCAG362176AG362177
length746750
length of high quality
(start - end)
689 (46 - 734)68 (137 - 204)
definitionCHROMAT_FILE: MSMg01no163_f06.b1 PHD_FILE: MSMg01no163_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:54 2005CHROMAT_FILE: MSMg01no163_f06.g1 PHD_FILE: MSMg01no163_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGATGGCGGGGCTGCCCACAAGGCAGACAGGTCTACAAAATCT
CCCTGCAACAGTTATTCTCATTATCCCTCTAAATGTCAAACTTCTTAACT
CCCCCCTAACTCTTTGCATGCAGCTTTGTGGTGAGCAGCCCACCTTTCTG
TCTTCATCTCTGTACTCCAGACATCTTACCATGGATTTGGCCACATTAAA
CCAACAGCAACTTTGAGACTTTCCATGCCAGCCTTTGCCTCATCTTCCTG
AAATGCTTTTCCTGGTGTGTCTGTCTACCAGAAACCTTCCACAAGCCATG
AAGCAGCATCTCCTCCCTCCAGCCTTGCCCGGCTTTCCCCTCCTAGAAGA
ACTGACTACCCCTCCCCATCCTTTATTTTTCTACCATTCCCAGGACTGGC
TGGCTTCAGCTGGATGCCTAATATGCATACAGTATTTTAGAGAGCTATGT
TCTTTCTGTCTGACACCACTACTCAATTGTGGCATCCTCATGGTAGAGAT
GAATATTTATTTCTGTCTGTATCCTGCACACACTGCCACATTCTCAACCC
AAGACCTCAAAGCAGGCATCCAATACTGACCATTCCTAGCCCTAATTTGC
CTGTTATTTCAAATCACAATAAAATGAGTGTCATTATCTTATTATGTTAG
TGCATTTGGATAAATACTAGGTTCAAAAATGTGATGCGAGATTCAN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAAATAGTACAGAAAATATGCTGC
ATGATTCTGCATATAGGATTTTCAAAGTAATCTACATCACCAGAAGACAG
ATCAGCGGAGGCAAGGTATAGGGTAGGGTATGACAGAAAGGGGCACAAAG
AACTTGTGGAAATGGTTGATTCAACTGGCCATTTGAATTGTGGTAATGAC
TTCTAAAATAGGTCAAGTTGATCAAAGGGGGTTGCCCTTTCTCATAATTC
AGGGTACTCCATGAAGTTTTAAAAAATTAGATACATTATCTGAAAAAATT
TTTAAAATTGAGTGTAGAGACTTGCCTTTCAGGCAAAACAACTAATTCTT
TTTAAAAATCCATTCCCTACCTGAATATTGAACCTCCTCTCCAACCTGGG
AGCCTTTCAGCACCTCACATGCATCCACTAGGGCTAGCAAGACTATATTC
TAGTTATGGGTTGTTTGGTTTATCTACTCCTGCCTTTTCATCTCTGAAAG
GTGAGTTCAGAAATATTAAATTTCTCAGTTTCCTCCCTCCTGCCTGTGNT
GTGTGGTTTGTGAGAAGGTGAGAGAAGAAATAAATGGACTGGGCACGGCA
AAGCAGGACCACTGGGTAGCCTATAGAAGTGCTGCTTTTGGCACTGAGGT
TGAAAAAGGAAGGGCACCAAAGTTGTGTTAATCCTTGCAAAAAAAGGTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_f06.b1 MSMg01no163_f06.b1 CHROMAT_FILE:
MSMg01no163_f06.b1 PHD_FILE: MSMg01no163_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:54 2005
         (689 letters)



>mm_chr18_7218997_7220085
          Length = 1089

 Score = 1263 bits (653), Expect = 0.0
 Identities = 677/685 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagatggcggggctgcccacaaggcagacaggtctacaaaatctccctgcaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagatggtggggctgcccacaaggcagacaggtctacaaaatctccctgcaac 264

                                                                       
Query: 65  agttattctcattatccctctaaatgtcaaacttcttaactcccccctaactctttgcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttattctcattatccctctaaatgtcaaacttcttaactcccccctaactctttgcat 324

                                                                       
Query: 125 gcagctttgtggtgagcagcccacctttctgtcttcatctctgtactccagacatcttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagctttgtggtgagcagcccacctttctgtcttcatctctgtactccagacatcttac 384

                                                                       
Query: 185 catggatttggccacattaaaccaacagcaactttgagactttccatgccagcctttgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catggatttggccacattaaaccaacagcaactttgagactttccatgccagcctttgcc 444

                                                                       
Query: 245 tcatcttcctgaaatgcttttcctggtgtgtctgtctaccagaaaccttccacaagccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatcttcctgaaatgcttttcctggtgtgtctgtctaccagaaaccttccacaagccat 504

                                                                       
Query: 305 gaagcagcatctcctccctccagccttgcccggctttcccctcctagaagaactgactac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagcagcatctcctccctccagccttgcccggctttcccctcctagaagaactgactac 564

                                                                       
Query: 365 ccctccccatcctttatttttctaccattcccaggactggctggcttcagctggatgcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccctccccatcctttatttttctaccattcccaggactggctggcttcagctggatgcct 624

                                                                       
Query: 425 aatatgcatacagtattttagagagctatgttctttctgtctgacaccactactcaattg 484
           |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatatgcacacagtactttagggagctatgttctttctgtctgacaccactactcaattg 684

                                                                       
Query: 485 tggcatcctcatggtagagatgaatatttatttctgtctgtatcctgcacacactgccac 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 685 tggcatcctcatggtagagatgaatatttacttctgtctgtatcctgcacatactgccac 744

                                                                       
Query: 545 attctcaacccaagacctcaaagcaggcatccaatactgaccattcctagccctaatttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attctcaacccaagacctcaaagcaggcatccaatactgaccattcctagccctaatttg 804

                                                                       
Query: 605 cctgttatttcaaatcacaataaaatgagtgtcattatcttattatgttagtgcatttgg 664
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 805 cctgttatttcaaatcacaataaaatgagtgtcattatcttattaggttagtgcaattgg 864

                                    
Query: 665 ataaatactaggttcaaaaatgtga 689
           |||||||||||||||||||||||||
Sbjct: 865 ataaatactaggttcaaaaatgtga 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)