BAC Information

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BAC

Clone NameMSMg01-163N20
Chromosome18 (Build37)
Map Location 74,641,124 - 74,779,436
singlet/doubletdoublet
Overlap geneMyo5b
Upstream geneRkhd2, Smad4, Elac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126
Downstream geneAcaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163N20.T7 (MSMg01no163_n20.b1)MSMg01-163N20.TJ (MSMg01no163_n20.g1)
ACCAG362535AG362536
length731733
length of high quality
(start - end)		312 (49 - 360)283 (79 - 361)
definitionCHROMAT_FILE: MSMg01no163_n20.b1 PHD_FILE: MSMg01no163_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005CHROMAT_FILE: MSMg01no163_n20.g1 PHD_FILE: MSMg01no163_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,641,124 - 74,641,430)(74,779,154 - 74,779,436)
sequence
AGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTCTTTTTCTGTAGGCACAGAACACAGTGATGTGAGACAAT
TTCGAATTGACTCATTAAAGGAACTGAAGTTGGGATGAAGGTTTGCCTGA
TCTAAAGTAGATAGATCTTCATGTGTACGACTTTCTTATCAGGAACAAGG
AGCAGAGGAGGATTTCTGGGCTCTGGCTTTGTTACCATATACTACACAAT
AGACAACGCTGGGAAGATCAGAACTGCACTGGGTAGGTGAGAATTGACAA
ACTTTAGAGGACTTTTAGAGAAGGGAGTTTACATATACCCCCTTGATTCA
TCCCAGGGATTTGATCTGCCCCTCCCCCGATGACTACTACCAAGCCTTCC
CACTTCCGGGTCTGACCGCCCACAATTAGAAGTGCTTGTTGAACAAGCTA
ATGGATTATTTGTCTGCAGTTTTTGCTTGTTCAGCATATTGTATTCAATG
CCCTCTTGGTGCTCCCAGATAACAGCAAATGTGAACCCGGGTAGATGTTT
CTGGGGAATAGAAATGTGATGGTCCTACTGGGGCTGGTTTATGCCCCTTC
TCTTTGAACTTTGCTTTGCATGACCGTAGTCCCTGCTGTATGCAGGTGAG
TCTATTGTAACCTTTACCACTTAACATTCACACCACCCTTCCTTAAGTGT
CCAACTTATGTTTTCTGGTGTTTTTTTGGTT

AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTTTGCCAAGAGTAACTG
CTTTGTCTTTAGAAGGAGGTCCACGTCTCTGAAATCTGCCTAAGAGATAA
GCTGAGCACTGAAAGTTGCTCGACGGAGAAAGCCAGTCTGGTTCAGAGAA
AATAGTGTGAGTTGCAAAGTGCTGGCCTAGTTGCTCTAACGCAGGCACAC
ATATGGTACCAAAGCCACGCTCCATGGATTTCTTCTGCACTGGGGCCACA
GGCAGGGCCTGACTTCAGAAGTCTTAGAACTACATAACTTAAACTAGATA
CCAACTGAGTGTTGTACAATACAGTTCGCTGTGGAAGGCCTCTTACTAAT
GCATGCTGGGGTTAGCACCCCCACTCAAACTTAACGACATGGTTATGCTC
CAATCCCCATGAAAACGCTGGGGACAATGCATCAGGATGTGGAGTGTCAG
CTACTTCAGGATGTGGAATGCCAGCTGGCTATGGAACCACAGGGATTCTG
TCATTGTCCACACTATCAGAGGTCCCTCCTCGTCTTTCTAACAGGTGGAT
GGTTCTGCAATGGTGTATCTGGGTCAGAAACATCACTATCACATCGGGGC
TCATGAGAAATGCAGAGTACTGGTCCTTTTTCTAGACCTTCTGAATCAGA
AACTCCAGATGGGCAGTCCAGTGTAGACCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_n20.b1 MSMg01no163_n20.b1 CHROMAT_FILE:
MSMg01no163_n20.b1 PHD_FILE: MSMg01no163_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:33 2005
         (312 letters)



>mm_chr18_74640920_74641631
          Length = 712

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctttttctgtaggcacagaacacagtgatgtgagacaatttcgaattgact 64
           |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcattctttttctgtaagcacagagcacagtgatatgagacaatttcgaattgact 264

                                                                       
Query: 65  cattaaaggaactgaagttgggatgaaggtttgcctgatctaaagtagatagatcttcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattaaaggaactgaagttgggatgaaggtttgcctgatctaaagtagatagatcttcat 324

                                                                       
Query: 125 gtgtacgactttcttatcaggaacaaggagcagaggaggatttctgggctctggctttgt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgcgactttcttatcaggaacaaggagcagaggaggatttctgggctctggctttgt 384

                                                                       
Query: 185 taccatatactacacaatagacaacgctgggaagatcagaactgcactgggtaggtgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccatatactacacaatagacaacgctgggaagatcagaactgcactgggtaggtgaga 444

                                                                       
Query: 245 attgacaaactttagaggacttttagagaagggagtttacatatacccccttgattcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgacaaactttagaggacttttagagaagggagtttacatatacccccttgattcatc 504

                  
Query: 305 ccaggga 311
           |||||||
Sbjct: 505 ccaggga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_n20.g1 MSMg01no163_n20.g1 CHROMAT_FILE:
MSMg01no163_n20.g1 PHD_FILE: MSMg01no163_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:33 2005
         (283 letters)



>mm_chr18_74778954_74779636
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctttgccaagagtaactgctttgtctttagaaggaggtccacgtctctgaaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tctgctttgccaagagtaactgctttgtctttagaaggaggtccacgtctctgaaatctg 424

                                                                       
Query: 61  cctaagagataagctgagcactgaaagttgctcgacggagaaagccagtctggttcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctaagagataagctgagcactgaaagttgctcgacggagaaagccagtctggttcagag 364

                                                                       
Query: 121 aaaatagtgtgagttgcaaagtgctggcctagttgctctaacgcaggcacacatatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaatagtgtgagttgcaaagtgctggcctagttgctctaacgcaggcacacatatggta 304

                                                                       
Query: 181 ccaaagccacgctccatggatttcttctgcactggggccacaggcagggcctgacttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccaaagccacgctccatggatttcttctgcactggggccacaggcagggcctgacttcag 244

                                                      
Query: 241 aagtcttagaactacataacttaaactagataccaactgagtg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aagtcttagaactacataacttaaactagataccaactgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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