BAC Information

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BAC

Clone NameMSMg01-164L01
Chromosome18 (Build37)
Map Location 65,593,941 - 65,594,479
singlet/doubletsinglet
Overlap geneMalt1
Upstream geneLOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2, LOC667816
Downstream geneLOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164L01.T7 (MSMg01no164_l01.b1)MSMg01-164L01.TJ (MSMg01no164_l01.g1)
ACCAG363087AG363088
length1,350724
length of high quality
(start - end)
---539 (80 - 618)
definitionCHROMAT_FILE: MSMg01no164_l01.b1 PHD_FILE: MSMg01no164_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:37 2005CHROMAT_FILE: MSMg01no164_l01.g1 PHD_FILE: MSMg01no164_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGCGACCGCGCACATATAGCGCTAATATATAAATAATATANCGGTTGT
AGTAAGTGATATGTGGTGACTAAGGCGCGCATGAGCGATTAAGAGGCGGA
GCGACGTGGCCGCAACAAGATGGTACACATAATACGGGGGATAAGATACG
GAGTCGCCACATAGTATTACCGGATAGTACGACGCGCGCGANACACTCTT
AGTAAATATATCGAGAAGGAGGAACGCGCGGGCTGGCGGTCGTACTCGGG
TGAACATAACGCGGCACCGATTACGGACGCGACATCACATTTCGCGGAGC
ATAGAAAACGTCGTCGCGGGGAGTCACCCTCATACCGCAGGAGTATGCTG
GAGACGCTTATTGCGCGCAACACAACGTGTGTCGGAACGAGCGCATCGTC
CCACGATACTCAGTATGTACGAGCATATAGTATAGAGCGCGTGTAATGCT
GGGGCGATGAGCGGACTGGACAGTCCGCGCATCGGTGTAACTCTCGCCGC
CGCGAGTACGGCGTAGGGCAGTATAGATAGTGGGCGATTACGAGGATGGT
CCGCATTACTGATAGGTGGCGCGTCCNGCGGCGCGCGGTGCGGCGCGGGC
GAAANATATTACCGCGGGGATATGTTACGCTGTCGCGATCTGTGTGCGCA
TTGCGACATGTNACCTCCGAGATCGTAGATCTACGCCTTAAGATGTGTTG
TAGAGGTATATGTTCATCGGCGCGCCGTGGTGGGCTCGATATATAACGTC
GACGAAGAGACGGCGCGCGGAGTCGACGGGCGCTGGTATATATACCCACA
CGCGCGTGTTTATTTCCGCTACACNGCGGCGNATAATATGCGTCACCGTG
CTTTNATATCTCTACAACGATCTTCGACATACATATACGACGCAGCGTGG
ACGCGCTGGGGCGGATATATATATCCGCGACTGGTCGTCATATTTACCGC
ACGCGGTCTGCTATTTCTGCGCGTCGGTATAATGATTGTGCGCGCTGCGT
CTCGTATTGTATTANTGGCCTCGCGTGTTATAATACGCGACCGCCGTTGT
GTTATTGTATGTCGGAGTGCCCGACGCGACGTATGCGATGATGACCACGC
GCGATACGCTGTATGCGCTCAGAGCGTACTATCGCTGATAGCTGTAGTTC
CCACACGCGCGCGGGTTCATATATCACGTGCGTCGATAGATATCTCGGGC
CGAGCTAGAACGAATGGTATCACGTCGCAACNGACGATACGTCCGTCGCG
TTATGGAGTGTGACAGCGATGTAGCGTCATCTGTGAGGCNCAGTCGCCTA
GATTAGTCCGTATTGTATTCTTCGTTCGCGCACGCGCGTCTCGAAATGAN

CCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCCTAATCTCAAAATTT
TGCCCTTTGTGTTTATTTTTCTCTTTCTCCTTTTATCGGCTTGAGACCAG
GTCTTACTTTCATAGACCAGGCTAGCCTCAGAGTTATCATGATCCTCCCC
CCTCTGCGTTTTGAGTGCCACCATGCTCAGCCTCTTGCCACATTTTTCCC
CTCGGCCTTTACATCTTTCTTTAAATTACATGAGAATTTAATAAAACAAA
TCATAGTAAGAGTCCATTCTGCATTGTCCTCAGAGATTAGGAATATTGAA
AATGTTTTTACAGTTGATTAATGATGTGATTATTGGTGAGATTATTGATG
ATTCAGATTGAATCGTTGCATGTACTCTAGTTTCCAATAACTACTGACCC
TGATTCTGTTCAAACTGATCTAATATCAGGTACTTTAAATACAGGATTTC
TATTGCCCTAGCTAACCTGGAACTTGTTATCTAGACAGAGCTAGCCGTGA
ACACAAAGAGATCTTCCTCTGCCCTTAGGTGCAGAAATTAAAGGCATGTT
CCACGCTGTTTGGATAAGATTGTATGCTGCCTTCTTCCAGTTTAGACATA
CTCTTAGCGTGCCAACATATGTTAATTGGTGGTGAGCGGAACGGCTAAAC
TACCAGGATTGGCGGACCTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_l01.g1 MSMg01no164_l01.g1 CHROMAT_FILE:
MSMg01no164_l01.g1 PHD_FILE: MSMg01no164_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:37 2005
         (539 letters)



>mm_chr18_65593741_65594679
          Length = 939

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%), Gaps = 1/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagccctaatctcaaaattttgccctttgtgtttatttttctctttctccttttatcgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 acagccctaatctcaaaattttgccctttgtgtttatttttctctttctttttttatcgg 260

                                                                       
Query: 61  cttgagaccaggtcttactttcatagaccaggctagcctcagagttatcatgatcctccc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cttgagaccaggtcttactttcatagaccaggctagcctcaaagttatcatgatcctccc 320

                                                                       
Query: 121 ccctctgcgttttgagtgccaccatgctcagcctcttgccacatttttcccctcggcctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ccctctgcgttttgagtgccaccatgctcagcctcttgccacattttttccctcggcctt 380

                                                                       
Query: 181 tacatctttctttaaattacatgagaatttaataaaacaaatcatagtaagagtccattc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tacatctttctttaaattacatgagaatttaataatacaaatcatagtaagagtccattc 440

                                                                       
Query: 241 tgcattgtcctcagagattaggaatattgaaaatgtttttacagttgattaatgatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcattgtcctcagagattaggaatattgaaaatgtttttacagttgattaatgatgtga 500

                                                                       
Query: 301 ttattggtgagattattgatgattcagattgaatcgttgcatgtactctagtttccaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattggtgagattattgatgattcagattgaatcgttgcatgtactctagtttccaata 560

                                                                       
Query: 361 actactgaccctgattctgttcaaactgatctaatatcaggtactttaaatacaggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actactgaccctgattctgttcaaactgatctaatatcaggtactttaaatacaggattt 620

                                                                       
Query: 421 ctattgccctagctaacctggaacttgttatctagacagagctagccgtgaacacaaa-g 479
           |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 621 ctattgccctagctaacctggatcttgttatctagacagagctagcagtgaacacaaaag 680

                                                                      
Query: 480 agatcttcctctgcccttaggtgcagaaattaaaggcatgttccacgctgtttggataa 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatcttcctctgcccttaggtgcagaaattaaaggcatgttccacgctgtttggataa 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)