BAC Information

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BAC

Clone NameMSMg01-164N04
Chromosome18 (Build37)
Map Location 4,684,137 - 4,684,425
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik
Downstream geneLOC268988, Svil, Zfp438, LOC100039442, Zeb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N04.T7 (MSMg01no164_n04.b1)MSMg01-164N04.TJ (MSMg01no164_n04.g1)
ACCAG363175AG363176
length726734
length of high quality
(start - end)
313 (50 - 362)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no164_n04.b1 PHD_FILE: MSMg01no164_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005CHROMAT_FILE: MSMg01no164_n04.g1 PHD_FILE: MSMg01no164_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATAAGGATAACTACAGCACAAGGAGGGTACCTACATCAAA
GACAATATAATAAATTAATCATCTCACAACAAAACCAAAGGAGAGAATTG
CATACACATAATACCACCTACATCAACAAACATAACAGGAACTAACAATC
ATCTCTCTTTAATATCTCTCAATATCAACAACTCAATTCCCCAATTAAAA
AAACATAAACTAACAGACTGGACATGCAAACGGGATCCAGCATTATTCTG
CAAACAAGAAACACACCTCAATGACAAAGACAGACACTATCTTAGAGTAA
AAGGCTGAAAAGAATTTTTTTTTTCCCCCCCACCCCCACGAAACAAGTGG
GAGTAGACATTCTAATATCCACCCACCACAAAAATAAACCAAAAGTCATC
AAGCAAGATGGGGAAGGACACTTCATATTCTTCAAAGGAAAAATCCACCA
ACAGACAGTCTCATGTGTGAACACCCATGCCCCACATGCAAGGGAATCCA
CCTTCGTACAAGAAACTTTACTAAAACTCACAACACATTGAACCCCACAC
AATAATAACGAGAGACCCCAACACTGCACTTTCATCAATGAAGTAGGATC
TACCCCGATACCCAGCGCAACTAATAGAGGTTATGAATCCAACAGATTGA
ACAGATTTCTACAGAACATTTCCCCC
NCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCTTATCCAAAATGAGTCAT
CCAATCTCAGACCTGGAAAGAACCATCAGACATTCAATCCCCTTCTCCCA
TTTCTGGGTGGTGGCCAAGTTCAAGGCCTGCAAATTGTTCTCTGACTGCC
ACAGAGAGGTATAGGGTGGGATTTCCAGTCCCTGGGAGTTGTATTTCATT
TCATAGTGCTGCATTGGTAAAGGGACTTTTTATTTGTACCTTAATCTGTG
AATTAAATTATCAAGCAAGCGGGTTAAAGGCCTTACTTTGTGAACAGAAA
TTTTGGATGGCCTCCAATGTCTAAAACACTCAAGATACACACACACACAC
ACATACTTTATGGCTTATTCCCCCCCCACCCTGGAAATGTCAATGGCATA
GACCGAGTTCTATCTGGAAAGGAAGAATGTATTTCTATTTTAAATTGTTA
TTACATTTTCCTGTGTGTATGCACATGCGTGTATGTCATATACCACATTG
CGTTAGTTAAGTTCTCTTTCCATTAATTGCCCCTTCCATTGATTCCATTT
TATCATTTTTGCTGTTTAAGAATCTTTCTCCTCTATCTTCTTTTCGTCCC
TTCTGCACTTTCCCGCACTTTTCCCGTGTTTTCCAATCGCTATTTCCTTA
TCCATTCCTTCCTCTCCTTTATCCTTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n04.g1 MSMg01no164_n04.g1 CHROMAT_FILE:
MSMg01no164_n04.g1 PHD_FILE: MSMg01no164_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:47 2005
         (287 letters)



>mm_chr18_4683853_4684541
          Length = 689

 Score =  501 bits (259), Expect = e-146
 Identities = 281/289 (97%), Gaps = 2/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcttatccaaaatgagtcatccaatctcagacctggaaagaaccatcagacattcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taggcttatccaaaatgagtcatccaatctcagacctggaaagaaccatcagacattcaa 514

                                                                       
Query: 61  tccccttctcccatttctgggtggtggccaagttcaaggcctgcaaattgttctctgact 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 513 tccccttctcccatttctgggtggtggccaagttcgaggcctgcaaattgttctctgcct 454

                                                                       
Query: 121 gccac--agagaggtatagggtgggatttccagtccctgggagttgtatttcatttcata 178
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gccacagagagaggtatagggtgggatttccagtccctgggagttgtatttcatttcata 394

                                                                       
Query: 179 gtgctgcattggtaaagggactttttatttgtaccttaatctgtgaattaaattatcaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgctgcattggtaaagggactttttatttgtaccttaatctgtgaattaaattatcaag 334

                                                            
Query: 239 caagcgggttaaaggccttactttgtgaacagaaattttggatggcctc 287
           | || |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctagtgggggaaaggccttactttgtgaacagaaattttggatggcctc 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space:   189040
Effective search space used:   189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)