BAC Information

Click to search

BAC

Clone NameMSMg01-164O02
Chromosome18 (Build37)
Map Location 15,852,886 - 15,853,235
singlet/doubletsinglet
Overlap geneChst9
Upstream genePsma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473
Downstream geneLOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164O02.T7 (MSMg01no164_o02.b1)MSMg01-164O02.TJ (MSMg01no164_o02.g1)
ACCAG363210AG363211
length782752
length of high quality
(start - end)
254 (42 - 295)351 (72 - 422)
definitionCHROMAT_FILE: MSMg01no164_o02.b1 PHD_FILE: MSMg01no164_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:51 2005CHROMAT_FILE: MSMg01no164_o02.g1 PHD_FILE: MSMg01no164_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATACTGCAACCAATTTAAAAACCAAGAGAAGGATGTTAGTGTATTAT
GCCATGAAACCAAAGACTTGTTCACATAGCTTAGGAGGGTATTTTCTTTT
CTTTTCTTTTTTCTTTCTTTTTTTTTCTTTTCTTTTCTTTTTTTTTTTTT
TTGCTTTTGGTTTTTTGGTTGTTTTTTGTTTGTTTTTTAAGACAAGGTTT
CTCTGTATAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGT
CTTGAGCTCGGAAATCCGTTCTGTCTCTGCCTCCCGAGTGCTGGGATTAA
AGGTGTGTTTTTTTATGCCCCCCCGCCCCTATTCTTTTAGATTTCTGTTA
TGACTTGATCCACTACTTAATTAGTTTGCTCTCCTTTGATTTGTCTTCTC
GTACATAGGAAGAATTTGGTTTTTGTTTGTTTTTTATATAAACATTGGAA
CTTTTCTGTGTATTATAGGAATGAGTTTATTATTTGCCTTACAAATATCC
TGTGCCCTTTTCTTTGCGTTTGGCTTGGTTTATTTTGTTTTCCTATCCTT
TTTTTTTACCAGAGAACTTTTTATTAATCTTTTTATACAATATCCTTTTT
TATTTCTTTTATGTTTGTTTATTATCTCCTCCTCTTTTTTATTTTAACTT
GTTTTAAGTGTCTTCTTTTATTTTTTTTTTTCTTATTTTCATTATATATT
TTCTCCCCACTGCGTATTTTTATATATCATAA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTCTCCCGAGACTCTGGTGAGAGGATA
TGTTCTTTGCCTCCTTAATCCCACTGCTTATTCTGGCTGATTGTGATACT
GTGAAATTGTGCATCCTTCTCTATGTGTACCTGACCAATAGCAGAGGCAC
TGTGAGCATGGAAGGGCATTGGGTTTATTGTCCATCATTGTTTCAGGGCA
CAAATATTGCTTTTTGTTAAATTTGAATTGCTTCCTCTGATTTTGCTCAC
AGTGGCTTACTTCGTAAAATTAAAATAAGTATTTATTCCTTCCCCCTAAA
CACTGCCTTGCTTGCCCACATGAGGACCTTCCTGTTAGCTGCTTTTTTTC
TGAAGCACATTTCCTCCCTCAGCTGTTTGCATGACTGAGTTTTCTCTTAT
CCTGTAGAACAAAGCTGGTGTGTTCCTACACATCCTCAAGTAAGTGTCCC
TGACCTTTCATCTCCTATAGTTTTGTTTGTAAGTTGGTTTATGATGATTA
GAATATTGTCTACCAATCTTTTGTCTTATGCATGATCTTGATCTCATGAC
AATTATACAGGCTTTCATAAAGAGGTGCGCCTCGTTCTTACTTGGTGACC
TATGCCTCTCTTGCTTCCCCTTGTTTCTGAAGTTAATGCGGTCATCCCCT
ACTTACGCCAGCACCCCATTTCACCCCTTCATCTCCATATTACACTTCAT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_o02.g1 MSMg01no164_o02.g1 CHROMAT_FILE:
MSMg01no164_o02.g1 PHD_FILE: MSMg01no164_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:51 2005
         (351 letters)



>mm_chr18_15852686_15853435
          Length = 750

 Score =  617 bits (319), Expect = 0.0
 Identities = 343/351 (97%), Gaps = 1/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctcccgagactctggtgagaggatatgttctttgcctccttaatcccactgcttat 60
           |||||||||||||||||||||||||||||| ||||||||||||  ||||  |||||||||
Sbjct: 550 ttttctcccgagactctggtgagaggatatattctttgcctccaaaatcagactgcttat 491

                                                                       
Query: 61  tctggctgattgtgatactgtgaaattgtgcatccttctctatgtgtacctgaccaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tctggctgattgtgatactgtgaaattgtgcatccttctctatgtgtacctgaccaatag 431

                                                                       
Query: 121 cagaggcactgtgagcatggaagggcattgggtttattgtccatcattgtttcagggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagaggcactgtgagcatggaagggcattgggtttattgtccatcattgtttcagggcac 371

                                                                       
Query: 181 aaatattgctttttgttaaatttgaattgcttcctctgattttgctcacagtggcttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaatattgctttttgttaaatttgaattgcttcctctgattttgctcacagtggcttact 311

                                                                       
Query: 241 tcgtaaaattaaaataagtatttattccttccccctaaacactgccttgcttgcccacat 300
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 310 tcgtaaaaataaaataagtatttattccttccccctaaacactgccatgcttgcccacat 251

                                                              
Query: 301 gaggaccttcctgttagctgctttttttctgaagcacatttcctccctcag 351
           ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 250 gaggaccttcctgttagctgc-ttttttctgaagcacatttcctccctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 750
Length adjustment: 9
Effective length of query: 342
Effective length of database: 741
Effective search space:   253422
Effective search space used:   253422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)