BAC Information

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BAC

Clone NameMSMg01-166E01
Chromosome18 (Build37)
Map Location 7,634,015 - 7,634,371
singlet/doubletsinglet
Overlap genenone
Upstream gene4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562
Downstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166E01.T7 (MSMg01no166_e01.b1)MSMg01-166E01.TJ (MSMg01no166_e01.g1)
ACCAG364136AG364137
length754758
length of high quality
(start - end)
364 (49 - 412)338 (80 - 417)
definitionCHROMAT_FILE: MSMg01no166_e01.b1 PHD_FILE: MSMg01no166_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:41 2005CHROMAT_FILE: MSMg01no166_e01.g1 PHD_FILE: MSMg01no166_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCATATATACACAGACAGTACTGTTTGTGGTGAGGTTCAGT
AGGGTGGACTAGGGTGAAGTACATATGTGTATATACTTGCTCATGTTTGC
ACGTATATGCATGTATGTGTGGAACCCAAAGACTGACCACAGACATGCCC
CACTGCCTAGCTTTTGTAGTGTAGATCCCAGCTCAGATTAACTAAGGGCT
TTGCAGACTAAGCCGTTACCTTGGTCCCCAGAAAACAAGTTTTAGCCTCA
CTTTTAAAAACAAACCAACAAGTAAAACTCTAAATCAAAAATAGGTTCTG
GTGGCTCAGGTCTCTAATCTCAGCACCTTGAGAGACTGAGGATTAGAAGT
TCAAGGGCTTCCTGGCACACCTTAATATCCAGGAGAATGGCTGACCAAAA
CTCTGCCTCAAATTTTAAAGGAACCTTATAAGCTGTCTGTGGCCGCATAC
CAGCAGCAGCATAATTGCCCAGCATGCTGAAGCCCCTGCATTTCCCCCTG
CTACCCCAAACTAATTCCTGATACCCCTGTACATTACTTTACCATGTTTC
TCACAAACTTCATTTCCTCTCCTGTTACCCCTTATTCCTCTCTTATAAAC
CCATTGCCTCTGACCCCATTTTAGTCTCTCCCCTTCTTTCATAAATTTAG
CCTCTACACCCCTCTTTTTAAAACCCGGTTTTTATTTCTTCCACCACCTA
TATC
NTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTCTCTGGATTTTTAT
CAGTTGTGGTTTTCTGCAAAGGTCTCTGTTGCAAAGAGAAGTGTAGGGAT
AAATGCTTAGAATATAGTTACTGAGTATCCTAGCTCAGTGCAGTGGCAGT
TAAAAGTTCTCCTTCAATACCGTGACTTCTCTAGTTTAGGTCAGCATAAT
TTCCCTTTTGTTGAGCAGGCCTTAATTCCAGTTAGAGAGCTGTTGGTCAC
CTCCGAGTACAGGCATCATAGCTGGGCAGGACGACTGGTCGCATCTCTCC
TCGGAAGTTTGCATGGTGCCTTCCAGGGCTATGAAAGCTAGTCCTCAGAG
ATGGAATTTCTAAGTCACACCCACTTCAGGTCCTCTGGATCCTGTGCCTG
AAGGACACGTTGTCTTCAGCAATAGAGCCTTACATCCCTGTGGTGCAGCC
AAGGGTAACACCTATAAACTATACTGTTTTGATTATCTCTAACACAATCT
TTACCCTCAATTTCAATGTAGACCTTTTTATTTTCGGTGTCCAGCCATTT
AGTTTCGTTTTCCTCCGGCCCTTTATTTATTCCATCGCTTTCTCCCCATC
CTACCTCTCTCTCTTTCCTGTGTATTTATTTTTCGCTCTAAATTTTGTTC
CTTCTCCTCACCATTCCATACTCCGCCACCCGCTTGTGTTTGGTAGATTT
CTTTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_e01.b1 MSMg01no166_e01.b1 CHROMAT_FILE:
MSMg01no166_e01.b1 PHD_FILE: MSMg01no166_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:41 2005
         (364 letters)



>mm_chr18_7633811_7634574
          Length = 764

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcatatatacacagacagtactgtttgtggtgaggttcagtagggtggactag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcatatatacacagacagtactgtttgtggtgaggttcagtagggtggactag 264

                                                                       
Query: 65  ggtgaagtacatatgtgtatatacttgctcatgtttgcacgtatatgcatgtatgtgtgg 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ggtgaagtacatatgtgtatatacttgctcatgtttgcatgtatatgcatgtatgtgtgg 324

                                                                       
Query: 125 aacccaaagactgaccacagacatgccccactgcctagcttttgtagtgtagatcccagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacccaaagactgaccacagacatgccccactgcctagcttttgtagtgtagatcccagc 384

                                                                       
Query: 185 tcagattaactaagggctttgcagactaagccgttaccttggtccccagaaaacaagttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagattaactaagggctttgcagactaagccgttaccttggtccccagaaaacaagttt 444

                                                                       
Query: 245 tagcctcacttttaaaaacaaaccaacaagtaaaactctaaatcaaaaataggttctggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcctcacttttaaaaacaaaccaacaagtaaaactctaaatcaaaaataggttctggt 504

                                                                    
Query: 305 ggctcaggtctctaatctcagcaccttgagagactgaggattagaagttcaagggct 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctcaggtctctaatctcagcaccttgagagactgaggattagaagttcaagggct 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)