BAC Information

Click to search

BAC

Clone NameMSMg01-166H13
Chromosome18 (Build37)
Map Location 74,238,451 - 74,348,813
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H13.T7 (MSMg01no166_h13.b1)MSMg01-166H13.TJ (MSMg01no166_h13.g1)
ACCAG364286AG364287
length752741
length of high quality
(start - end)
231 (132 - 362)335 (81 - 415)
definitionCHROMAT_FILE: MSMg01no166_h13.b1 PHD_FILE: MSMg01no166_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:59 2005CHROMAT_FILE: MSMg01no166_h13.g1 PHD_FILE: MSMg01no166_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,238,451 - 74,238,680)(74,348,479 - 74,348,813)
sequence
NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTTTCTAACTGTGCTGGAATACATTTTGCTTGAGAAA
TTAAAAGGAAATTGATTTTGGTTTATTCCAGACAGTCATTTTCAAATGAC
TGTAAAGTCTGGAATAAACTGTAGTTTCTGTGACCCCCAACACACAGCCA
AGCCGGTCTCCATCTAGGCGTGAGGAATTTACTAGCAATGGAGTTTCCGT
ATGATTAATCCAACTTGAACAAGTAATTTTCATGGGAAAAAAATCATAGC
CGAGTAGATGAAACACAAATGTGTTTTTATATATTAAATAAACACACACA
GACACATACAGGCCTTCAGTGAATTCCCANTCAATTCCCGTAATTTCATA
ATGGAAGGTCAGTCAGCTGTCTCCCCACCAAAAAAAAAAAAATACTCAGC
ACAGGAATAGAACTACCTAAAATCTTTTAGGATGGGCTGTGTCTTTGTTG
AAAGTATTCATACCATCTTCTGGAGTTCACAGGACGGTCCTCGTAGGACA
CGAAATGTGTTTTGTTTGCCTTTTAATAACAATATTTTTTTAAATATCTT
TTATACTTATTTTCTCTCTGTATACCCCTAATACATTCTCTATGTTTATT
ATACTTTTTATATAATACAAAATATTCTCCCTCCAAATACAAATATATAT
ATTATTTTTTTCACTCAACAACCCACTTTATTTTTTTAATTATTTTTTTT
TT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATACAGCCAGAGATGTAG
AAAACAAAACAAAACAACCCTCTGTCTTGAAAAACAACAGCAATAACAAA
AAGTGAGATAGGTTCTTACAGAGAAAGACAGATTAAGGATACATACTGAC
ACGTATCAGCTACATACATAAGAAACAATACACAGATATCCCTGCGTCTT
TGGAAACAGGACCTGATTTCACTTCCCAGTACCTATTTCAGGTGCATTGC
ACAACACTCACTGCAGCTTGCGGAGATCTAACATACTCCTCTGGCTTCCT
AGGGCACCTGCATAGATGTGGTATAATAGTCAAAGCTATCTAGAGTAAGA
TAACTTATAGGACACACTCCCCCTCTCACACACACACACACACTCACACA
CACACATGATTTATTAGAGTGACTCGTGGGTTATGGTCCAGATAATCCAA
CAACGGCTGCTTCTGAATGGAAGGTCCAAGAATCCAGAAGTTATTTGTTC
AGTCCATGAAGTTGGATGTTTCCGTTGGCTTTCTTCGAATACTAATATTT
CCGCATAGCGCTCTCTGTTTATTGATCTTGCAATAATATGTCCTGTTTAT
TATAACCCACCAGCCAAACCTCCCCTTCTTTCACGCTCTCAATATTATTA
TTCCCCATCAATTTTACTTCTACTTGAACCCCTTCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h13.b1 MSMg01no166_h13.b1 CHROMAT_FILE:
MSMg01no166_h13.b1 PHD_FILE: MSMg01no166_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:59 2005
         (231 letters)



>mm_chr18_74238251_74238880
          Length = 630

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtcattttcaaatgactgtaaagtctggaataaactgtagtttctgtgacccccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcattttcaaatgactgtaaagtctggaataaactgtagtttctgtgacccccaac 260

                                                                       
Query: 61  acacagccaagccggtctccatctaggcgtgaggaatttactagcaatggagtttccgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagccaagccggtctccatctaggcgtgaggaatttactagcaatggagtttccgta 320

                                                                       
Query: 121 tgattaatccaacttgaacaagtaattttcatgggaaaaaaatcatagccgagtagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattaatccaacttgaacaagtaattttcatgggaaaaaaatcatagccgagtagatga 380

                                                              
Query: 181 aacacaaatgtgtttttatatattaaataaacacacacagacacatacagg 231
           |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aacacaaatgtgttttta-atattaaataaacacacacagacacatacagg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 630
Length adjustment: 9
Effective length of query: 222
Effective length of database: 621
Effective search space:   137862
Effective search space used:   137862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no166_h13.g1 MSMg01no166_h13.g1 CHROMAT_FILE:
MSMg01no166_h13.g1 PHD_FILE: MSMg01no166_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:59 2005
         (335 letters)



>mm_chr18_74348279_74349013
          Length = 735

 Score =  609 bits (315), Expect = e-179
 Identities = 330/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatacagccagagatgtagaaaacaaaacaaaacaaccctctgtcttgaaaaacaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 caatacagccagagatgtagaaaacaaaacaaaacaaccctctgtcttgaaaaacaacag 476

                                                                       
Query: 61  caataacaaaaagtgagataggttcttacagagaaagacagattaaggatacatactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caataacaaaaagtgagataggttcttacagagaaagacagattaaggatacatactgac 416

                                                                       
Query: 121 acgtatcagctacatacataagaaacaatacacagatatccctgcgtctttggaaacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acgtatcagctacatacataagaaacaatacacagatatccctgcgtctttggaaacagg 356

                                                                       
Query: 181 acctgatttcacttcccagtacctatttcaggtgcattgcacaacactcactgcagcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 355 acctgatttcacttcccagtacctatttcaggtgcattgcacaacactcactgcagcctg 296

                                                                       
Query: 241 cggagatctaacatactcctctggcttcctagggcacctgcatagatgtggtataatagt 300
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aggatatctaacatactcctctggcttcctagggcacctgcatagatgtggtataatagt 236

                                              
Query: 301 caaagctatctagagtaagataacttataggacac 335
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 235 caaagctatctagaataagacaacttataggacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)