BAC Information

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BAC

Clone NameMSMg01-166I13
Chromosome18 (Build37)
Map Location 46,099,942 - 46,100,414
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626309, LOC225457, LOC100042900, Kcnn2
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166I13.T7 (MSMg01no166_i13.b1)MSMg01-166I13.TJ (MSMg01no166_i13.g1)
ACCAG364333AG364334
length723789
length of high quality
(start - end)
473 (73 - 545)174 (80 - 253)
definitionCHROMAT_FILE: MSMg01no166_i13.b1 PHD_FILE: MSMg01no166_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:04 2005CHROMAT_FILE: MSMg01no166_i13.g1 PHD_FILE: MSMg01no166_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAGAGGATC
CGCGGAATTCTGACATTCCCTCCAAACTCAACCTCTACACTACCTATGCC
AAACAAATGGGTGTTCTTTGGGGTGCAACTTAAAAGCTGTACCTGATAGG
CCAGCACAGCACTCCATAGTCTACAGCAGGATTTCACATGCCAATCGGGC
AATGGAAGGAGGGTTATTAAACAAAGAGATCCAAAGCCCATGAGTTGTAT
CCAGGTTGTGCTCACAGTGCTAAATGGCTAAGATCTGAAAAGGGGAGAGA
TTGAACTTTCCACATAAGACTTTGAGGTTTGGCAGAGGGAATCAATAGGA
AGCATTATACCTCATGCTAGGATGGATGCGCTGGGAAGAGCCAGCTGCTT
CTACCAGTCTCTTCACCCCCCCGTTTTCAGCATTTTGAATGGCTACTAGA
ACCTCCATAAGTTTATAATGGATGACATCACTTCTACCCATCAACAAGCT
TAGTCTTTCAACACAAACAAAAAAGAAAGAAAGGAAAATAAAGCAAACAC
AGTTGAAAGAGTCACCCCTGCCCTGCTCCCCACACATCCATTTGAGAGAC
TATCGCTCTATAAATGATTTTTCTATAGTTACTGGTGTCTAGAGAGATGG
TAGTACAACCCCACATAGTGAAAATGACCTCTAACAGCTTGAAACCACGC
CTTTAACCCTCCCCCCTGCCCCA
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTAAAACCATCTGGCCC
CCATTTTTCTTGGGGGGGGGAGACTTTTAATTATTGCTTTTATTTTGCTA
GAGGTTATAGGTCTGTTTAAATTGCTTATCTGACTTTGATTTAACTTTAG
TAATATATATCAAGAAAATTATCTTCTTTTTTTTTGTTTTTGTTTTGGTT
TTTCCAGACAGGATTTTTCTGTCATATCCTAGTCTGTCCCGTATCTCACC
CCGTCCACCACGCTGACCTTTTTTTTATAATTCTGCCCCCCTCTCGAACC
CCATTATTATCACACTCCCCTCTTTTTATATCCTCCCGTTCCCCCTTCCT
ACTTTTTTTTTCTGTCCCCCCCCCATTATTTTATTACACCACTCTTCCTG
TATATCCTTTAATTTTATCTACTATCCTTATCTTTCTCACATTTTTTCAT
CATCAATTTCTCTCCTTCTTCCCTTATTCCACCTTTCTCACAAACCCCCT
CTTTATCCCCCCCTACTTCAACTTCTAAATCTTTTCCAAAACTCTATTCC
TCCTCCAATTTATCCCCATATTTCCCCCCCCCCCTATTTTACACCCTACA
TTAATAACATAAATTATCTGTCCCTCTCTCTTTAACAGTTTATACTATTG
TCCCCCACAATAAGTCATATTCCTAACCCCTCATATTTTTATAGTCACCA
CCTACCTCCCTACTTATATTTATTCACTAACCTCCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_i13.b1 MSMg01no166_i13.b1 CHROMAT_FILE:
MSMg01no166_i13.b1 PHD_FILE: MSMg01no166_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:04 2005
         (473 letters)



>mm_chr18_46099742_46100614
          Length = 873

 Score =  862 bits (446), Expect = 0.0
 Identities = 466/478 (97%), Gaps = 10/478 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactcaacctctacactacctatgccaaacaaatgggtgttctttggggtgcaactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaactcaacctctacactacctatgccaaacaaatgggtgttctttggggtgcaactta 260

                                                                       
Query: 61  aaagctgtacctgataggccagcacagcactccatagtctacagcaggatttcacatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagctgtacctgataggccagcacagcactccatagtctacagcaggatttcacatgcc 320

                                                                       
Query: 121 aatcgggcaatggaaggagggttattaaacaaagagatccaaagcccatgagttgtatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcgggcaatggaaggagggttattaaacaaagagatccaaagcccatgagttgtatcc 380

                                                                       
Query: 181 aggttgtgctcacagtgctaaatggctaagatctgaaaaggggagagattgaactttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttgtgctcacagtgctaaatggctaagatctgaaaaggggagagattgaactttcca 440

                                                                       
Query: 241 cataagactttgaggtttggcagagggaatcaataggaagcattatacctcatgctagga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataagactttgaggtctggcagagggaatcaataggaagcattatacctcatgctagga 500

                                                                       
Query: 301 tggatgcgctgggaagagccagctgcttctaccagtctcttcaccccccc-----gtttt 355
           ||||||||||||||||||||||||||||||||||||||||||| |          |||||
Sbjct: 501 tggatgcgctgggaagagccagctgcttctaccagtctcttcatc-----tgtgtgtttt 555

                                                                       
Query: 356 cagcattttgaatggctactagaacctccataagtttataatggatgacatcacttctac 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cagcattttgaatggctactagaacctccataagtttataatggatgacatcacttctac 615

                                                                     
Query: 416 ccatcaacaagcttagtctttcaacacaaacaaaaaagaaagaaaggaaaataaagca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccatcaacaagcttagtctttcaacacaaacaaaaaagaaagaaaggaaaataaagca 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)