Query= MSMg01no166_k14.b1 MSMg01no166_k14.b1 CHROMAT_FILE:
MSMg01no166_k14.b1 PHD_FILE: MSMg01no166_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:13 2005
(307 letters)
>mm_chr18_76086104_76086811
Length = 708
Score = 572 bits (296), Expect = e-168
Identities = 302/304 (99%), Gaps = 1/304 (0%)
Strand = Plus / Minus
Query: 5 gaattcc-cacagctgtcgaaatggatgtgctgacctgaacagatcttctgtccaccccc 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattccacacagctgtcgaaatggatgtgctgacctgaacagatcttctgtccaccccc 449
Query: 64 agactgaccgaccgttcaggagtcgctggcagatgtctctagccgcaggaatggacagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agactgaccgaccgttcaggagtcgctggcagatgtctctagccgcaggaatggacagag 389
Query: 124 aacaatttctgtagtgctgactgtaaagcccagcagaagagtggctcttggaaaccctgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacaatttctgtagtgctgactgtaaagcccagcagaagagtggctcttggaaaccctgc 329
Query: 184 actaaaccagcagcaggcactttaaagggcagaggggggaggggagccaggatctcagag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 actaaaccagcagcaggcactttaaagggcagaggggggaggggagccaggatctcagaa 269
Query: 244 gctctcccactggaatcctctgcaaaccaggttccagtgaacaggccccactagggtgat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctctcccactggaatcctctgcaaaccaggttccagtgaacaggccccactagggtgat 209
Query: 304 ttgc 307
||||
Sbjct: 208 ttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 708
Length adjustment: 9
Effective length of query: 298
Effective length of database: 699
Effective search space: 208302
Effective search space used: 208302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_k14.g1 MSMg01no166_k14.g1 CHROMAT_FILE:
MSMg01no166_k14.g1 PHD_FILE: MSMg01no166_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:13 2005
(630 letters)
>mm_chr18_75928618_75929647
Length = 1030
Score = 1125 bits (582), Expect = 0.0
Identities = 618/630 (98%)
Strand = Plus / Plus
Query: 1 cacctttgtgagtgtgtctgttgctgctgccatctctgatggatgccaggctccaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctttgtgagtgtgtctgttgctgctgccatctctgatggatgccaggctccaggagc 260
Query: 61 ttcagattttgatgtagactcacagcagtgactctgcagggagcatccaggccttggcct 120
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttcagattctgatgtagactcacagcagtgactctgcagggagcttccaggccttggcct 320
Query: 121 tgggctgaacgattggtcccttttgttccaaggtatccaaagcattaaacccagcagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctgaacgattggtcccttttgttccaaggtatccaaagcattaaacccagcagcta 380
Query: 181 ctggtttctccagctctccagcactcgggcattcggacagccactgggagaccatcagag 240
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 381 ctggtttctccagctctccagcacttgggcattcagacagccactgggagaccatcagag 440
Query: 241 gaccatgcaagctgatctagtgagtaaggctgtatacaggtgtttcacattagagttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccatgcaagctgatctagtgagtaaggctgtatacaggtgtttcacattagagttgat 500
Query: 301 ttcgttcttctagggaaccccgattagcacagccctcaaactcggcagtgcatcagaaga 360
|| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tttgttcttatagggaaccccgattagcatagccctcaaactcggcagtgcatcagaaga 560
Query: 361 agcctggaagctttaaagagtacaggcaccccagacttgcactgccctcccggaaccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctggaagctttaaagagtacaggcaccccagacttgcactgccctcccggaaccaga 620
Query: 421 gtctgtaagaatgaaagtcatccttaattttgacaaccctgagcctcatcatgagacagg 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgtaagaatgaaagtcattcttaattttgacaaccctgagcctcatcatgagacagg 680
Query: 481 gttttacaatatgcacctttaagcgttgctaatcttttgacactagtgtctggatttgaa 540
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 gttttacaatatgcacctttcagcgttgctaatcttttgagactagtgtctggatttgaa 740
Query: 541 cttaatggctccttggtaagtgtaggattctgatctgatagatttgatagagaagactat 600
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttaatgtctccttggcaagtgtaggattctgatctgatagatttgatagagaagactat 800
Query: 601 gtatctatgtatgaatgtatgtatgtgtgt 630
||||||||||||||||||||||||||||||
Sbjct: 801 gtatctatgtatgaatgtatgtatgtgtgt 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
