BAC Information

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BAC

Clone NameMSMg01-166O17
Chromosome18 (Build37)
Map Location 40,467,675 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166O17.T7 (MSMg01no166_o17.b1)MSMg01-166O17.TJ (MSMg01no166_o17.g1)
ACCAG364592AG364593
length780784
length of high quality
(start - end)		217 (45 - 261)268 (75 - 342)
definitionCHROMAT_FILE: MSMg01no166_o17.b1 PHD_FILE: MSMg01no166_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:33 2005CHROMAT_FILE: MSMg01no166_o17.g1 PHD_FILE: MSMg01no166_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGGGAAATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGT
CAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCA
AATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCC
CACCCCTCCCTCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGG
GAGGGGGAGGNNTTNNNNNNNNNTTNNNNCNCNNNTTTTTTTTCTCTTTT
TTTTTTTTTTTNCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTTTTT
CTTTTTTTCCTTTTTTCCCCCCCCTCCTCTCTCCTTCTTCCTTTCTTTTT
TTTTTTTTTTTTTCCCCCCCCCTTGGTTCTNNNTTTTTTTCTCTTTCTTT
TCTTTTCTCCCCCCTTTCCCTTTCTCCTCCCTTTCTTTTTTTTTCCTCTC
TTTTTTTTCTTCCCATATTATCTTTCTTTTCGTCTTTTTTCCATCCTTTT
CTTTCATTTACCAATTTTTTTTCACTACATTCCATTACCGTTCACCACTT
CCATTTTTTTTTGCTCCTTTTCCTACTCCCTTTAAATTATGTGTCTCTAC
TAACCCTTTTTCTTAAACCTTAATTTAAGCAAATATCTTACCACTCTTTT
TTTCCTCCCCCACCTTTTCTTTTTTTTTTATAATAAATATCTTTTTTGTA
CCATCTTTTTTATTTCTCATCTCACCTTTC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCC
ACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATA
CCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAA
GAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTC
AGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTG
GAATTTCTACTTCATGTTTATTTTTTTTATTTTTTTTTTTTTGGANACNG
AANTTCTCTGTATATTCCTGTCTGTCCTGTNTTTCTTTTTGTATATCACT
TTGGTCTCGCCCCCCCTTTCACAAATGAATTTGTTTCTNTAGTGATCCGA
CTATACGCTTGTACCCCCTTTTCCCTCCCCTTGTTTAAATGATAACCAGT
CTTTTCTAAATCCTTTACTACCCCTTGTATATTTCACCTTTAGTCTGATA
CTTTATATAACAACCCAAACACACTCATAATAACTTTCCTTATTCCATTT
CCCCCCTAATATATTTCCCTTTACTTCTCCACCCTCTTTTATTTTCCCCC
CTCTCTTCTCTATCTCCTCCCCCTTCCTTGGCTTTATTGATTTATTATTT
CCCCACCCTAAATAATTATAACAAACACTTTATTTTTTTTCATTACCTTA
TAACCTTATTATCATCGTTAATCATTTCTGTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_o17.g1 MSMg01no166_o17.g1 CHROMAT_FILE:
MSMg01no166_o17.g1 PHD_FILE: MSMg01no166_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:33 2005
         (268 letters)



>mm_chr18_40467479_40468145
          Length = 667

 Score =  383 bits (198), Expect = e-111
 Identities = 234/246 (95%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 382

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 381 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 323

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 322 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 263

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 262 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 203

                 
Query: 241 tgttta 246
           ||||||
Sbjct: 202 tgttta 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 667
Length adjustment: 9
Effective length of query: 259
Effective length of database: 658
Effective search space:   170422
Effective search space used:   170422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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