Query= MSMg01no167_b10.b1 MSMg01no167_b10.b1 CHROMAT_FILE:
MSMg01no167_b10.b1 PHD_FILE: MSMg01no167_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:46 2005
(675 letters)
>mm_chr18_20470319_20471393
Length = 1075
Score = 878 bits (454), Expect = 0.0
Identities = 518/572 (90%), Gaps = 52/572 (9%)
Strand = Plus / Minus
Query: 156 cgtctcgattccacagtaaatatggtcacagactctttttctcctactccaaatcccca- 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 cgtctcgattccacagtaaatatggtcacagactctttttctcctactccaaatccccat 1016
Query: 215 ---tctctctctctctctgtctctgtttctgtctctc----------------------- 248
||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctctctctctctctctctgtctctgtttctgtctctctctctctgtctctctgtctctct 956
Query: 249 ---------tctctctgtctctg----------------tctctctctctctctcatccc 283
|||||||||||||| |||||||||||||||||||||
Sbjct: 955 gtctctctgtctctctgtctctgtctctctctctctctctctctctctctctctcatccc 896
Query: 284 agcctagagaataaactatacatttccaaacacctcttcccctaggcaaacatttccatg 343
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 895 agcctagagaataaactatacatttccaaacacctcttcccctaggcagacatttccatg 836
Query: 344 aaaactctgataagttgatatattttattgacaaatcattaaccaagaaatacctgtttg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aaaactctgataagttgatatattttattgacaaatcattaaccaagaaatacctgtttg 776
Query: 404 gaggaattttttaaaaagcagttaattagaaataattgtataaaccaagaaacaaagagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaggaattttttaaaaagcagttaattagaaataattgtataaaccaagaaacaaagagt 716
Query: 464 tattaaaaaatccagcgaaagttcacagataggtgctaaaatagctcaaatgagtagaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tattaaaaaatccagcgaaagttcacagataggtgctaaaatagctcaaatgagtagaaa 656
Query: 524 tgctacactaagcctcaaggatccgaatttatatgaaattaagaatttgaagtacttgat 583
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 655 tgctacactaagcctcaaggatcccaatttatatgaaattaagaatttgaagtacttgat 596
Query: 584 tattttagcaatacacagacattccttttgttaaataacatactttataataattgttga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tattttagcaatacacagacattccttttgttaaataacatactttataataattgttga 536
Query: 644 attttttcccatagcccaggttttgacatcaa 675
||||||||||||||||||||||||||||||||
Sbjct: 535 attttttcccatagcccaggttttgacatcaa 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_b10.g1 MSMg01no167_b10.g1 CHROMAT_FILE:
MSMg01no167_b10.g1 PHD_FILE: MSMg01no167_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:46 2005
(454 letters)
>mm_chr18_20333130_20333983
Length = 854
Score = 843 bits (436), Expect = 0.0
Identities = 448/452 (99%)
Strand = Plus / Plus
Query: 1 ttcgcccagccattatctggtcagttttaaaatattaagtctctagtgttctccttcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgcccagccattatctggtcagttttaaaatattaagtctctagtgttctccttcctc 260
Query: 61 ggggctaaagggagcaggagaagagagcaggcagtcaggcgttatctggtatcaccaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggggctaaagggagcaggagaagagagcaggcagtcaggcgttatctggtatcgccaaac 320
Query: 121 aacagccccctaaaccgccatcaacaaggaaagtgaaatatgcaacagctactctaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagccccctaaaccgccatcaacaaggaaagtgaaatatgcaacagctactctaatgt 380
Query: 181 acagagatgcttgtttcccttttaattcagacaaaagctgaagtttaagatggcctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagatgcttgtttcccttttaattcagacaaaagctgaagtttaagatggcctcaaa 440
Query: 241 cttgccaagcagcctaggatgacctgtatgttctgaccctctgtcctacacttcctagat 300
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgccaagcagccaaggatgacttgtatgttctgaccctctgtcctacacttcctagat 500
Query: 301 gcattataggcacacactgtcagcccaggtttaacgtggtgctgggaatcaaatccaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcattataggcacacactgtcagcccaggtttaacgtggtgctgggaatcaaatccaggg 560
Query: 361 ctttgtgcatgggagaaaagctctctgcccagtgaggttcatcccaggccccagatgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgtgcatgggagaaaagctctctgcccagtgaggttcatcccaggccccagatgttt 620
Query: 421 tgtttgtgtgtgtgtacgtgtgtgtgtgtggg 452
|||||||| |||||||||||||||||||||||
Sbjct: 621 tgtttgtgcgtgtgtacgtgtgtgtgtgtggg 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
