BAC Information

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BAC

Clone NameMSMg01-167D21
Chromosome18 (Build37)
Map Location 39,424,657 - 39,538,317
singlet/doubletdoublet
Overlap geneArhgap26
Upstream genePcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream geneNr3c1, Pabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167D21.T7 (MSMg01no167_d21.b1)MSMg01-167D21.TJ (MSMg01no167_d21.g1)
ACCAG364798AG364799
length719719
length of high quality
(start - end)
672 (46 - 717)637 (76 - 712)
definitionCHROMAT_FILE: MSMg01no167_d21.b1 PHD_FILE: MSMg01no167_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:57 2005CHROMAT_FILE: MSMg01no167_d21.g1 PHD_FILE: MSMg01no167_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,424,657 - 39,425,322)(39,537,683 - 39,538,317)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTTCTTCTAGACCCACATTTGCCCGAGTGCTGCCCAGTTCCC
ACTTTGATGATAATGAACTGAGCTTATGAACTTGTAAGCCAGTCCCAACT
AAATGTTATTCTTATAAGAGTTGCCTTGGTTACAGTGTCTATTCATAGTA
GTAAAACCCTAACTAAGACAAATATCAAGTCTTGAAGACAAGGTCGAAGT
GAAAGAAAATGTCAAATCTGTAAAACACAAAACAAAGCAAAACAAAATAG
GGGAAGAAAAGACCATGTAGGAACTCTGGCTTGAAGCTCTGTTTCCTGTT
AATCCAGTTTGTCATGTGACTGACAGCTCTATGGGGCATAGGGTTCAGTC
TCTAGACAATTTAGTGTTGATGTTCAAATGGAGTATGAGAAGTAGTCCTG
GCTCAACTCCAGCTAAGTAAAGTTTCTAGATTGTTACAACTGATCTTCAG
GTGATGGATGACTAGGGGATGTGAGTCTAGGAACCCTACTTGAAGATTCG
GGCAGAAGGTGGAAGACAGGTGCACATCATGTGGTTCTCAGGCAAGTGCA
TGGCGCTGGTTGCTAATGTTAGTCTAGTGATCCTTCTTGGTCATGCAGGT
AGGTGGAGTTGGCATCTGACTAGAGAAAGGAGCAAGCATACACAGGGGGA
ATGGATAGAGATGGCTGCG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATAGTGAGAGTGATAGATACCAG
ACCGGATCCCATGGGACAGCACGGAATTTCCGTGATGGGTCCTAAGGAAG
AAGTACTTTTAGTGTTTAGGGTGATTCTGGGACTTGTCGAATGGGGCCTC
CAGCTTAACACGAGTCATCAGTAGCCCAGATGACAGTAAAGGGGCTTTTG
GCCCTTAGTCATGGGCTTATAGCCAGAAGGGTTGTTGAGTCAAGAGCACC
AGCCGGGGAAGCTGCATGCCTGAGTGAAGGGCAGAAAGTCTTGTTCCGAT
AGGCTTTATACTCTGAGCCTATGAGGTAATGGGGCCTTTTGTCAAGGGTC
ACTTAACCTGCAGATTCAAGTTAATGAATACAGAAGGGACATCTGGCCAT
AGTACTGGAGCACATCTGGACTTTAGGGTAGGTACAAGACCTGGTAGGAT
GTGTGTTGATGTCTCCAAAAAGAACCCTCTGAATTCAAATCTTCACTGGA
GTTTTGGCTTAGCTCAGGAAGCAATATTATAGCCAGCGGGGCCTCACTAG
CAGCGCCTGTGGCCAGACTCCTGGGGTCAATTCCATAAAAGATCAGGTAG
CTATGTAGTATGACAACCAACCGCTGTGAGATATGTTTTTGATCATTTCA
GTGGAAAACCATCATGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_d21.b1 MSMg01no167_d21.b1 CHROMAT_FILE:
MSMg01no167_d21.b1 PHD_FILE: MSMg01no167_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:57 2005
         (672 letters)



>mm_chr18_39424454_39425525
          Length = 1072

 Score = 1249 bits (646), Expect = 0.0
 Identities = 661/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagttcttctagacccacatttgcccgagtgctgcccagttcccactttgat 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattctcagttcttctagacccacatttgcccgagtgctgccctgttcccactttgat 263

                                                                       
Query: 64  gataatgaactgagcttatgaacttgtaagccagtcccaactaaatgttattcttataag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gataatgaactgagcttatgaacttgtaagccagtcccaactaaatgttattcttataag 323

                                                                       
Query: 124 agttgccttggttacagtgtctattcatagtagtaaaaccctaactaagacaaatatcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agttgccttggttacagtgtctattcatagtagtaaaaccctaactaagacaaatatcaa 383

                                                                       
Query: 184 gtcttgaagacaaggtcgaagtgaaagaaaatgtcaaatctgtaaaacacaaaacaaagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcttgaagacaaggtcgaagtgaaagaaaatgtcaaatctgtaaaacacaaaacaaagc 443

                                                                       
Query: 244 aaaacaaaataggggaagaaaagaccatgtaggaactctggcttgaagctctgtttcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaacaaaataggggaagaaaagaccatgtaggaactctggcttgaagctctgtttcctg 503

                                                                       
Query: 304 ttaatccagtttgtcatgtgactgacagctctatggggcatagggttcagtctctagaca 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 ttaatccagtttgtcatgtgactgacagctctacggggcatagggttcagtctctagaca 563

                                                                       
Query: 364 atttagtgttgatgttcaaatggagtatgagaagtagtcctggctcaactccagctaagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttagtgttgatgttcaaatggagtatgagaagtagtcctggctcaactccagctaagt 623

                                                                       
Query: 424 aaagtttctagattgttacaactgatcttcaggtgatggatgactaggggatgtgagtct 483
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 aaagtttctagattgttacaactgatcttcaggtgatggattactaggggatgtgagtct 683

                                                                       
Query: 484 aggaaccctacttgaagattcgggcagaaggtggaagacaggtgcacatcatgtggttct 543
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 aggaaccctacttgaagatttgggcagaaggtggaagacaggtgcacatcatgtggtcct 743

                                                                       
Query: 544 caggcaagtgcatggcgctggttgctaatgttagtctagtgatccttcttggtcatgcag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caggcaagtgcatggcgctggttgctaatgttagtctagtgatccttcttggtcatgcag 803

                                                                       
Query: 604 gtaggtggagttggcatctgactagagaaaggagcaagcatacacagggggaatggatag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtaggtggagttggcatctgactagagaaaggagcaagcatacacagggggaatggatag 863

                 
Query: 664 agatgg 669
           ||||||
Sbjct: 864 agatgg 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no167_d21.g1 MSMg01no167_d21.g1 CHROMAT_FILE:
MSMg01no167_d21.g1 PHD_FILE: MSMg01no167_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:57 2005
         (637 letters)



>mm_chr18_39537483_39538517
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 633/637 (99%), Gaps = 2/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatagtgagagtgatagataccagaccggatcccatgggacagcacggaatttccgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ccatagtgagagtgatagataccagaccggatcccatgggacagcacggaatttccgtga 776

                                                                       
Query: 61  tgggtcctaaggaagaagtacttttagtgtttagggtgattctgggacttgtcgaatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgggtcctaaggaagaagtacttttagtgtttagggtgattctgggacttgtcgaatggg 716

                                                                       
Query: 121 gcctccagcttaacacgagtcatcagtagcccagatgacagtaaaggggcttttggccct 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gcctccagcttagcacgagtcatcagtagcccagatgacagtaaaggggcttttggccct 656

                                                                       
Query: 181 tagtcatgggcttatagccagaagggttgttgagtcaagagcaccagccggggaagctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tagtcatgggcttatagccagaagggttgttgagtcaagagcaccagccggggaagctgc 596

                                                                       
Query: 241 atgcctgagtgaagggcagaaagtcttgttccgataggctttatactctgagcctatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atgcctgagtgaagggcagaaagtcttgttccgataggctttatactctgagcctatgag 536

                                                                       
Query: 301 gtaatggggccttttgtcaagggtcacttaacctgcagattcaagttaatgaatacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtaatggggccttttgtcaagggtcacttaacctgcagattcaagttaatgaatacagaa 476

                                                                       
Query: 361 gggacatctggccatagtactggagcacatctggactttagggtaggtacaagacctggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggacatctggccatagtactggagcacatctggactttagggtaggtacaagacctggt 416

                                                                       
Query: 421 aggatgtgtgttgatgtctccaaaaagaaccctctgaattcaaatcttcactggagtttt 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 415 aggatgtgtgttgatgtctccagaaagaaccctctgaattcaaatcttcactggagtttt 356

                                                                       
Query: 481 ggcttagctcaggaagcaatattatagccagcggggcctcactagcagcgcctgtggcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggcttagctcaggaagcaatattatagccagcggggcctcactagcagcgcctgtggcca 296

                                                                       
Query: 541 gactcctggggtcaattccataaaagatcaggtagctatgtagtatgacaaccaaccgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gactcctggggtcaattccataaaagatcaggtagctatgtagtatgacaaccaaccgct 236

                                                
Query: 601 gtgagatatgtttttgatcatttcagtggaaaaccat 637
           |||||||  ||||||||||||||||||||||||||||
Sbjct: 235 gtgagat--gtttttgatcatttcagtggaaaaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1035
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1025
Effective search space:   642675
Effective search space used:   642675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)