Query= MSMg01no168_i17.b1 MSMg01no168_i17.b1 CHROMAT_FILE:
MSMg01no168_i17.b1 PHD_FILE: MSMg01no168_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:51 2005
(252 letters)
>mm_chr18_4744761_4745408
Length = 648
Score = 426 bits (220), Expect = e-124
Identities = 243/252 (96%), Gaps = 4/252 (1%)
Strand = Plus / Minus
Query: 1 agaaaatccagaggcttcaccagggaataattaagagatgtgttttccatttgtcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agaaaatccagaggcttcaccagggaataattaagagatgtgttttccatttgtcagaga 389
Query: 61 tatcagaaacagaatcaaaagaaaactcatgtggaaaaaaagagatgtcctcataaatgc 120
|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 388 tatcagaaacagaatcaaaagaaaactcatatgg-aaaaaagagatg---tcataaatgc 333
Query: 121 acaagattgagaaggagttgctgcagaggtaagacaacacaatggggaggaagggcagtg 180
||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 332 acaagatggagaaggaggtgctgcagaggtaagacagcacaatggggaggaagggcagtg 273
Query: 181 gatacacagtgcattaaaatcttcacggagcaacccaaaggacccgtgctccatgaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gatacacagtgcattaaaatcttcacggagcaacccaaaggacccgtgctccatgaactg 213
Query: 241 gatgtatgaaag 252
| ||||||||||
Sbjct: 212 gctgtatgaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 648
Length adjustment: 9
Effective length of query: 243
Effective length of database: 639
Effective search space: 155277
Effective search space used: 155277
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no168_i17.g1 MSMg01no168_i17.g1 CHROMAT_FILE:
MSMg01no168_i17.g1 PHD_FILE: MSMg01no168_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:51 2005
(393 letters)
>mm_chr18_4590442_4591234
Length = 793
Score = 659 bits (341), Expect = 0.0
Identities = 371/391 (94%), Gaps = 18/391 (4%)
Strand = Plus / Plus
Query: 1 tgttctctggaggtggatggcacctatgtgccaaggagcctcatcccccaaccctcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgttctctggaggtggatggcacctatgtgccaaggagcctcatcccccaaccctcctcc 250
Query: 61 tactgactagccacgtgggtaaaataacagcctctattctgagctcatacatagaagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tactgactagccacgtgggtaaaataacagcctctattctgagctcatacatagaagctt 310
Query: 121 ccttctaccagaggcagattttggatttagaaaactcttagcaaaatcttcctgtggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccttctaccagaggcagattttggatttagaaaactcttagcaaaatcttcctgtggctt 370
Query: 181 ctgaagaaacagtagattcactcggaggatcggcattctcctcaggtaaacaccccagcc 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 371 ctgaagaaacagtagattcactcggaggatcagcattctcctcaggtaaacaccccagcc 430
Query: 241 cagcccagcccagcccagcctagccca----------aacctcatgcatgctcattgctt 290
|||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 431 cagcccagcccagcccagcccagcccagcccagcccaaacctcatgcatgctcattgctt 490
Query: 291 tccttgttttgttgaaaagctaattatgaaaac----tttttttggaagaagctgctgct 346
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 491 tccttgttttgttgaaaagctaattatgaaaacagagttt----ggaagaagctgctgct 546
Query: 347 ctctagcttctcctgatgaaagggcttgttt 377
|||||||||||||||||||||||||||||||
Sbjct: 547 ctctagcttctcctgatgaaagggcttgttt 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
