Query= MSMg01no168_k19.b1 MSMg01no168_k19.b1 CHROMAT_FILE:
MSMg01no168_k19.b1 PHD_FILE: MSMg01no168_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:05 2005
(459 letters)
>mm_chr18_20842875_20843730
Length = 856
Score = 716 bits (370), Expect = 0.0
Identities = 397/408 (97%), Gaps = 7/408 (1%)
Strand = Plus / Minus
Query: 16 gaattcc-agacagttggggctacacagagaaaccctgtttaaaaaacac--caaaaact 72
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 668 gaattccaagacagttggggctacacagagaaaccctgtttaaaaaacacaccaaaaact 609
Query: 73 cctattccaattgatactgataacccttgtaaaaggaaatggaagcattatcaatacaat 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctattccaattgatactgataacccttgtaaaaggaaatggaagcattatcaatacaat 549
Query: 133 attgtccctttggagatccctgggggaagcagatttgtgtcattgtatctgtcctgtttc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attgtccctttggagatccctgggggaagcagatttgtgtcattgtatctgtcctgtttc 489
Query: 193 tttatgtacctttcaggtaaataacactctagatttcttgccttgggtttgcagatttgt 252
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttatgtacctttcagataaataacactctagatttcttgccttgggtttgcagatttgt 429
Query: 253 tatttgagaagcaaaatgtcacggtgttttttggaaggtggaagtgtacttaagattatt 312
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatttgagaagcaaaatgtctcagtgttttttggaaggtggaagtgtacttaagattatt 369
Query: 313 tattaagatatggaagtaagtgcattgacgtaaatgctagtgatttcttgctgtcttttt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tattaagatatggaagtaagtgcattgacgtaaatgctagtgatttcttgctgtcttttt 309
Query: 373 ttttttttgncttgttttgcttctcatggacatgtttgta-ttttttt 419
||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 308 tttttgt---cttgttttgcttctcatggacatgtttgtacttttttt 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 856
Length adjustment: 10
Effective length of query: 449
Effective length of database: 846
Effective search space: 379854
Effective search space used: 379854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_k19.g1 MSMg01no168_k19.g1 CHROMAT_FILE:
MSMg01no168_k19.g1 PHD_FILE: MSMg01no168_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:05 2005
(405 letters)
>mm_chr18_20803104_20803912
Length = 809
Score = 632 bits (327), Expect = 0.0
Identities = 364/383 (95%), Gaps = 14/383 (3%)
Strand = Plus / Plus
Query: 1 agaaatcgacaattgccccctggtcatggtattgagattttgccgggacaaggcagccat 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agaaattgacaattgccccctggtcatggtattgagattttgccgggacaaggcagtcat 260
Query: 61 cagaaatggggccaagaatgagatcccagaagacctacctcctccaaacagacaagtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaatggggccaagaatgagatcccagaagacctacctcctccaaacagacaagtgtc 320
Query: 121 tggagtcttggaaggcagtgtcagatcccagcttactgaccagagggagttagacacctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagtcttggaaggcagtgtcagatcccagcttactgaccagagggagttagacacctc 380
Query: 181 tctagcaagggaagtgaaggacaaaaaggacagatggacagggagatgcctgtcctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagcaagggaagtgaaggacaaaaaggacagatggacagggagatgcctgtcctccca 440
Query: 241 agagggtggtgtgagtgtgttcccttgcattcacatgcattttaagatagtgagaag--- 297
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 agagggtggtgtgagtgtgttcccttgcattcacatgcattttaagatagcgagaagaag 500
Query: 298 ttcctcaatacatggtgagctagaaatg-----tttttttagaccgtgaaa-tgcttctt 351
|||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 501 ttcctcaatacatggtgagctagaaatgacaactt-----agaccgtgaaaatgcttctt 555
Query: 352 taccccctttctgagtgaattta 374
|||| |||||||||||||||||
Sbjct: 556 tacctgctttctgagtgaattta 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 809
Length adjustment: 9
Effective length of query: 396
Effective length of database: 800
Effective search space: 316800
Effective search space used: 316800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
