BAC Information

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BAC

Clone NameMSMg01-169F05
Chromosome18 (Build37)
Map Location 86,003,233 - 86,003,553
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F05.T7 (MSMg01no169_f05.b1)MSMg01-169F05.TJ (MSMg01no169_f05.g1)
ACCAG366230AG366231
length667749
length of high quality
(start - end)
327 (4 - 330)213 (151 - 363)
definitionCHROMAT_FILE: MSMg01no169_f05.b1 PHD_FILE: MSMg01no169_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005CHROMAT_FILE: MSMg01no169_f05.g1 PHD_FILE: MSMg01no169_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGATCCGCGGAATTCATCACCTTGTGTTCTCAATATCTGTGCATGTTCC
TGCTATTATGCTGTGAATTACAGCAGAAGGTGGAACTAAATTCCAGTAAA
CGAAATAAGATACCAAATGACTGTAAGATATCAAATGACTGTAAGATATC
AAATGACTGAAAGATATCAAATGACCGTTCTGGAAATTATTACAACATAT
CACCTACATATGCATGTTTATAAATAAAATCATATTCATTATATACATTT
AAATAGTTTTATATACAGCACTGAATTTAAAAGGATAGCCTGGTTAGAAA
CCCAAGAAAGATGTTTTTATTTTTTTACTCCCCCCCCCCGCTGAATACTT
ATAAAAATTTATACTGACAGTTGTCAATAAAGAGTTGAAATTCTCAAATC
CACTATAGTGTGTGTGTATGTGTTTGTGAGTGACTCTCTCTTTGTGCGAG
TTTGTGTGTGTGTGTGACATTTCATTGCGTTTTTGGAGGTTGACTAGTTA
TGGAATTAAAAGGCTCACACATTTTCCTGCATTTCTTCTATGAACACTCT
GATTTCAAACTATATTATTTTATAATATTCTACACACGCTTTTTTTACTC
CCTTACGCCTCTTTACTTTTTTATATCTTTCCCCTGAATCTTCTCCTTTC
CCCCCTTTTGTCTCTTC
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATTTTCAAAATATATTATTGAGTAATGAAAAGAACATGGTAGTAGAATCC
ACCTTCCCTACAAACGCTATGTGGACCAATGGAAAAAATCAGATGTATCA
AACATGACTACATGTAACTTCAGCATATGATATTTAATGAAGAGGCCAAA
AGATACACTGGATAAAGAAAGTATCTTTAACAAACAGCACTGTGAAAAGT
GGATGTCCACTTGTTTAAGAATAAATTTGCCCCTGCATCTGTCATCCTGC
ATAAAAATTACCTTCATGTGGATCACAGACCTCAATTTTAATTTTGAAGT
GCTAAAATCACAGGAAGAATATATAGACAGTATTCTATAATACATGGATT
ATGAAAAGACTTTCTGACACTGACACCATTTGCTTAGGAATCAAGGACAG
AAACTGCCAAGTTGGATCTCATAAAACTAAAGATTAAGGAAGCAATCAAA
TGAAGAAGACAACTGTAGGATGGGAAGGGATCCTTACCAGTTATACATCA
GAGCATTCATATTTGTTATATAAAACAAACTCAAAAACAGCATGTCATGG
AAATAAATGACCAATTGAAAAACGGGGAGGCGCTTGGGATTGAAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f05.b1 MSMg01no169_f05.b1 CHROMAT_FILE:
MSMg01no169_f05.b1 PHD_FILE: MSMg01no169_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:59 2005
         (327 letters)



>mm_chr18_86003141_86003867
          Length = 727

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcatcaccttgtgttctcaatatctgtgcatgttcctgctattatgctgtgaatt 66
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 ggaattcatcaccttgtgttctcaatatctgtgcatgttcctgctattatgctgtgcatt 354

                                                                       
Query: 67  acagcagaaggtggaactaaattccagtaaacgaaataagataccaaatgactgtaagat 126
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 acagcagaaggtggaactaaattccagtaaacaaaataagataccaaatgactgtaagat 294

                                                                       
Query: 127 atcaaatgactgtaagatatcaaatgactgaaagatatcaaatgaccgttctggaaatta 186
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 293 atcaaatgactgtaagatatcaaatgactgaaagatatcaaatgactgttctggaaatta 234

                                                                       
Query: 187 ttacaacatatcacctacatatgcatgtttataaataaaatcatattcattatatacatt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttacaacatatcacctacatatgcatgtttataaataaaatcatattcattatatacatt 174

                                                                       
Query: 247 taaatagttttatatacagcactgaatttaaaaggatagcctggttagaaacccaagaaa 306
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 taaatagttttatatatagcactgaatttaaaaggatagcctggttagaaacccaagaaa 114

                                
Query: 307 gatgtttttatttttttactc 327
           |||||||||||||||||||||
Sbjct: 113 gatgtttttatttttttactc 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)