BAC Information

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BAC

Clone NameMSMg01-169I10
Chromosome18 (Build37)
Map Location 84,938,079 - 84,938,361
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
Downstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I10.T7 (MSMg01no169_i10.b1)MSMg01-169I10.TJ (MSMg01no169_i10.g1)
ACCAG366371AG366372
length834716
length of high quality
(start - end)
277 (92 - 368)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no169_i10.b1 PHD_FILE: MSMg01no169_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:14 2005CHROMAT_FILE: MSMg01no169_i10.g1 PHD_FILE: MSMg01no169_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATTACTTCCCAAACCTTTTCTGTTCGTTTGGCGCGCNNNNNAAATCT
ATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCTGGGGAGCGGGCTGCCAAGCCAATTAGAAAGTAGTTGGTTACCGC
CATAACTATAATGCCACTATCACATCAACTGGCACAAGTTACCTAACTAG
TTAGTATTATATAGCATGCAGGATCTGGCACTGGGCAAGACTACTGGTGT
CTTCTCTCCCCCTGTTGCCCTCATAGCATCTCCTAACACTATATAAGCTA
GCCAACAAAGAGAGTTTCCTGGTCATGAACCCCAAAGACCACCAAGGAGC
CGGATCCGATGCAATTGCATTAGGGTCTCTTTATTCAAGCTCAAGCTTGG
GCTCCCCTCTTTTCTTGACACACCCCCCCCCCCCCCGCCCTGAGTCTAGT
TTTAGGCAAGTATTTATAGATACAAGAAAAGAATATCTAGCTTGCCACGA
ATCTGATTTGGTTTCCATTATAACCTTTTAACATAATTGGTTGGTGAATG
GAGACACACCATGAACTTCTGATTTCCTCCTTGATGGCGGCTCGTTTGTA
AATGACACCGCCAGCGCCAAGTATTGGTTCCCTGGCGAAGAGCAGATCTT
GCTGACATATGGACCTGGCAAATATTCCGCCATAAAAGCCATCGTGCCTC
ATATTGCTTTACACCCCCCCCCCTCTTTTTCTTTTCCATCTTCCCAATTA
ATCTCGTTTTTTCTTTACCCCTTTAAAACCCCCCCATATATAACCACTCG
CGTGTGCCTCCTTAATAATTAGCCCAACGCCCTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCACTGCATGCATGTTCCCTCGA
GGCAGGAAAGGTGACTGTCAATCACGCCACCGCTGGAGACACAGCAGAGG
TGCTCAGGGGTTCTGCACCCTCCTCTACCTCTCCTCTTTCTGTCTCCTCT
CCTTGCTTGCACTGGCCATGGTGGGGACAAATGGGACGGTCCCCTCTTCT
CTCTGCAGAGGGCGTTAGAGGAACTTCTTAATCAGCACACTGCCCCCTCT
GCACCACAGCCATTATGGGATAGAAAAGGGCCGGTTTGCACAGCTGTAAC
TAGACACCCTCTTTATTTAGCCGCCCACCCACAGAGAGCTACTTAAAGTT
ATTTGGGTCATCAGTTAGATCAAGTGAGAAATTGTAGTCCAATGAATGGG
AGGCTTTGAATAGAAGGGAAATCAGCCCTACCAGGGTCCCAGAATGGAGG
GTGGGAAAATCTGCATAGACCTGTTCAGCTGGGCGTGCACCCTCTCGATG
GGTCCCTTGCAGGCCACCCACCCCCTACCCCAGCGCTCTTAATGCCTCAG
CCCCAACTTGATGTGCTTTCATTGGTATCAAATATTCCTTTACAATATCG
TATTTGCATGCATCTTGATCTACCCACCTCCAATTTTCTCTTCCACAAAA
GTTTCTCAGTGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i10.g1 MSMg01no169_i10.g1 CHROMAT_FILE:
MSMg01no169_i10.g1 PHD_FILE: MSMg01no169_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:14 2005
         (283 letters)



>mm_chr18_84937879_84938561
          Length = 683

 Score =  470 bits (243), Expect = e-137
 Identities = 273/283 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcactgcatgcatgttccctcgaggcaggaaaggtgactgtcaatcacgccaccgctg 60
           ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttcactgcatgcatgtaccctcaaggcaggaaaggtgactgtcaatcaggccaccgctg 260

                                                                       
Query: 61  gagacacagcagaggtgctcaggggttctgcaccctcctctacctctcctctttctgtct 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gagacacagcagaggtgctcaggggttctgcaccctcctctgcctctcctctttctgtct 320

                                                                       
Query: 121 cctctccttgcttgcactggccatggtggggacaaatgggacggtcccctcttctctctg 180
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 321 cctctccttgcttgcactggccatggtggggacaaatgggccggtcctctcttctctctg 380

                                                                       
Query: 181 cagagggcgttagaggaacttcttaatcagcacactgccccctctgcaccacagccatta 240
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cagagggtgttagaggaacttcttaatcagcacactgccccctccgcaccacagccatta 440

                                                      
Query: 241 tgggatagaaaagggccggtttgcacagctgtaactagacacc 283
           ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgggagagaaaagggctggtttgcacagctgtaactagacacc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)