BAC Information

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BAC

Clone NameMSMg01-169O13
Chromosome18 (Build37)
Map Location 31,884,855 - 31,885,131
singlet/doubletsinglet
Overlap genenone
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O13.T7 (MSMg01no169_o13.b1)MSMg01-169O13.TJ (MSMg01no169_o13.g1)
ACCAG366637AG366638
length689726
length of high quality
(start - end)
266 (46 - 311)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no169_o13.b1 PHD_FILE: MSMg01no169_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:43 2005CHROMAT_FILE: MSMg01no169_o13.g1 PHD_FILE: MSMg01no169_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
ACTTCTTAACAGAAAGAACAATGTAGAAAGTACGATAATACTTGATCTCA
AATTACACTACAAACCCATTGTTAACAAAAGGGCATGGTACTAGCTCAAA
ACCAGACACTTAGTTAGACCAGTACACTAGAACAGAGACAAGAAATAAGC
CACCAGGCTATACCCATTTATTTTGTCGACAAAGCTGCTCAAAACATACT
AGAGGAAAATGACAGCCCTTCAACAAAAGGGCTGTGGAACGCAGATATCC
ACATCAGAAGAGATTTAGCAGCGAAGCAGAAGAAGAATGAAGAACAAAGA
TCATNCACTTGGTAGCACGNTACGGAGCCCATTTCTTCGAATGCCACCCC
ACCTCATATTACTATATCCCATAAAAATGTTTCAAAATATGGGCCGATAT
ATGTGCAAAGTAAATACATATACTAGTTATTTCCTGCTACTCCCGAGTAC
AGAAGCTGCTTGCTATTTTCAGCATGGTACCTCCTTACCTGGTATGGTCA
TTTGAGCCTGAGCAGAGGATATGTCCCAGAGGATGCCAAGCCAAACTCCA
GATCATCCCTTCGTGGGCCATCTCCATCCCACCTACCTCCTTCTCTACCC
TGCAATAGCACAAGCAAGAGAAAAACAAACAAAACCATT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACGATGCCAGCTGCTGACAGCACTGCA
TCTGAGGGACCCAGAGGTCTCAGAAAGATGCGATGAGACAGAAGACGACC
ACTCAGCATTTCCATGTTAGTTAAATGATGAATTTTTTTCAGAGCAACTG
AAATAAAGGCAAGTCTTATTGGGAAGAGGCTTTAAAAAGCAGTTTCATGA
AATTGGGGGAAAAGATAATGGAAAAGCAGGACCCATGATGGAGGGAAGCA
GAGCCAGCAGTGACGTCGTAATGACAGGCATGGCCGTGAGCAGCTGTGGT
GGATGAAGGAGTATGCATCCCTGTTGCCGAATCCATNGCCTGTGTGGTAG
CCTGGAGCTCTCACAGTCCCCAGACTTGCTCAAAAAACAGAATCTGAGCG
CCGGCTCTGAGACAAAGAACGGTTTTTTTCTGGATTATGTCTCCTCCAAA
GACTTCCAAGGTCCGTGCTACCACCAGGGGCCATCTTGATGGTCTGTGAT
ATCCATAGTCTGTGCTGCCGCCAGATGCCTTCTTAAAGCCCAAGATTCGC
GCTGCCACTAAGGACCTGTTTGCTATCTGTGATCTGAGCTGCCACCGGAA
ACCATGTGTATAAGGGAGAAGGCACCAGCCCCACCATCACCACCCTCTTC
AGTAGGTACTGGACAGACCCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o13.g1 MSMg01no169_o13.g1 CHROMAT_FILE:
MSMg01no169_o13.g1 PHD_FILE: MSMg01no169_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:44 2005
         (289 letters)



>mm_chr18_31884655_31885342
          Length = 688

 Score =  453 bits (234), Expect = e-132
 Identities = 272/290 (93%), Gaps = 14/290 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgatgccagctgctgacagcactgcatctgagggacccagaggtctcagaaag-atgcg 59
           |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct: 201 acgatgccagctgctgacagcactgcatctgaggga-ccagaggtctcag-aagcatgcg 258

                                                                       
Query: 60  atgagacagaagacgaccactcagcatttccatgttagttaaatgatgaatttttttcag 119
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 259 atgagacagaaaacgaccactcagcatttccatgttagttcaatgatgaatttttttcag 318

                                                                       
Query: 120 agcaactgaaataaaggcaagtcttattgggaagaggctttaaaaagcagtttcatgaaa 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 agcaactgaaataaaggcaagtcttattgggaagaggctttaagaagcagtttcatgaaa 378

                                                                       
Query: 180 ttgggggaaaagataatggaaaagcaggacccatgatggagggaagcagagccagcagtg 239
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |     |||
Sbjct: 379 ttgggggaaaagatgatggaaaagcaggacccatgatggagggaagcaga-c-----gtg 432

                                                             
Query: 240 acgtcgtaatgacaggcatggccgtgagcagctgtggtggatgaaggagt 289
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 -----gtaatgacaggcatggccgtgagcagctgtggtggatgaaggagt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)