BAC Information

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BAC

Clone NameMSMg01-169P10
Chromosome18 (Build37)
Map Location 68,923,979 - 69,082,553
singlet/doubletdoublet
Overlap genenone
Upstream geneSeh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P10.T7 (MSMg01no169_p10.b1)MSMg01-169P10.TJ (MSMg01no169_p10.g1)
ACCAG366677AG366678
length721719
length of high quality
(start - end)
316 (45 - 360)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no169_p10.b1 PHD_FILE: MSMg01no169_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:47 2005CHROMAT_FILE: MSMg01no169_p10.g1 PHD_FILE: MSMg01no169_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,082,241 - 69,082,553)(68,923,979 - 68,924,258)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCCAGGCTACTAATGAGCACACACTGCTAAGGCTGTGTGCAAGG
CTCAGGGTAGAATTCCCCATGCTTTCTCTCGGGCTGAACATCTTTGGGTT
TGAAAATTCAGACATCACAGTATCAGTAACAAAGTAAGCTCTAGAACAAA
GTCTCAGAGGATCTGAGATGGTTCTGGTTCATTGTAAAGAAGGAAATGAA
TAGATGGAAATTTCCCCAAAACTTCACGGAGCCCAGCTACTGTGTGGAAT
ACACACAGAATTGAGACTTCAGAAAAGACAGGAAAATACCAATAAAAGCA
CTTTCTGTTATGTTAACACCGCCCCACGAAGGAAATGTGTTCTTGAATTA
GTAGAAGTAACCTGTTGGTATGTCTCTATTAGGTCAATCTTAGCACAAGT
GAGAAATTATAATATTAACCAACTAGCAAGATGGTTTGCACTGACCTAAC
CAGTCAGTACTTGCGAAGTCTGCAGATGTAGGTCTGAGCTGGTAGCTGGG
CAAGATACAACTGTGATGCTTGCCTGAAATTTCTTTACGTCTAGTAAAAT
AAAGCTACATGCAAGAAACATCCAGAAAATGAAACTACTAGACCCAAGAT
GAGGTTACATCAGCGATTCTCATGCAATTTTGCCTCTGAAGTGATAAGAT
TGTGCCTGGAGCATAGGATGG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGATGGGTTTGCTTCTTGGAT
TTTGGCCGATTTCCTGAGAGGAATATAAACTATCACTTTAACAACTCATT
TTTGAATCTTCCCCAAGATCAAGCTTCTTATGGATGACCCAAACTACGTA
TCTTTAACAACTATAATTCCTCATCAATAACAGAGAGTGCTTCTGCAATC
TAATCTGATAATACATGGATGGGTGGACACAGAGAGGTCCTATGTAGATA
GCCCCTGAAATGAGGACTTACTCAGCCACTAATGGTGCAGCTAATAGATA
GCTTCTAATTTTCCTCCATTGCACCCCCTCCCTGCTAATTATCCTGGGAT
GTTTGANAAAATCTAGCCAACGCATCAAAAATAGATTTAAGATAGGGTAG
ACGTCTTTATGTAGCAAAGTTGGAATTTTATTAAAGGGCAAAGACACACT
CAGAACACAGTATGAACTTCTCAAAGAAGAGTCGCATTCTAATATCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATATATA
TATATAAAGAGATTTTAAGAATGACGATTAAGAACAGGAGAGGAACTGAG
GGAAAAAAAGGCCGAAATGCTTTCTAATGGCATGAACGTCTGGCAGGCAG
GTAGGACACACACATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p10.b1 MSMg01no169_p10.b1 CHROMAT_FILE:
MSMg01no169_p10.b1 PHD_FILE: MSMg01no169_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:47 2005
         (316 letters)



>mm_chr18_69082038_69082753
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgccaggctactaatgagcacacactgctaaggctgtgtgcaaggctcaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcttgccaggctactaatgagcacacactgctaaggctgtgtgcaaggctcaggg 457

                                                                       
Query: 64  tagaattccccatgctttctctcgggctgaacatctttgggtttgaaaattcagacatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagaattccccatgctttctctcgggctgaacatctttgggtttgaaaattcagacatca 397

                                                                       
Query: 124 cagtatcagtaacaaagtaagctctagaacaaagtctcagaggatctgagatggttctgg 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cggtatcagtaacaaagtaagctctagaacaaagtctcagaggatctgagatggttctgg 337

                                                                       
Query: 184 ttcattgtaaagaaggaaatgaatagatggaaatttccccaaaacttcacggagcccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttcattgtaaagaaggaaatgaatagatggaaatttccccaaaacttcacggagcccagc 277

                                                                       
Query: 244 tactgtgtggaatacacacagaattgagacttcagaaaagacaggaaaataccaataaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 276 tactgtgtggaatacacacagaattgagacttcagaaaagacaggaaaataccaataaga 217

                        
Query: 304 gcactttctgtta 316
           |||||||||||||
Sbjct: 216 gcactttctgtta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_p10.g1 MSMg01no169_p10.g1 CHROMAT_FILE:
MSMg01no169_p10.g1 PHD_FILE: MSMg01no169_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:47 2005
         (286 letters)



>mm_chr18_68923777_68924462
          Length = 686

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tggatgggtttgcttcttggattttggccgatttcctgagaggaatataaactatcactt 62
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tggatgggctagcttcttggattttggccgatttcctgagaggaatataaactatcactt 262

                                                                       
Query: 63  taacaactcatttttgaatcttccccaagatcaagcttcttatggatgacccaaactacg 122
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 taacaactcatttttgaatcttccccaagatcaatcttcttatggatgacccaaactacg 322

                                                                       
Query: 123 tatctttaacaactataattcctcatcaataacagagagtgcttctgcaatctaatctga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 tatctttaacaactataattcctcatcaataacagagagtgcttctgcaatcttatctga 382

                                                                       
Query: 183 taatacatggatgggtggacacagagaggtcctatgtagatagcccctgaaatgaggact 242
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taatacttggatgggtggacacagagaggtcctatgtagatagcccctgaaatgaggact 442

                                                   
Query: 243 tactcagccactaatggtgcagctaatagatagcttctaa 282
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactcagccactaatggtgcagctaatagatagcttctaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)