BAC Information

Click to search

BAC

Clone NameMSMg01-170F12
Chromosome18 (Build37)
Map Location 69,317,712 - 69,432,706
singlet/doubletdoublet
Overlap geneLOC100043380, EG225681
Upstream geneD18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F12.T7 (MSMg01no170_f12.b1)MSMg01-170F12.TJ (MSMg01no170_f12.g1)
ACCAG366942AG366943
length765709
length of high quality
(start - end)
271 (105 - 375)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no170_f12.b1 PHD_FILE: MSMg01no170_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:16 2005CHROMAT_FILE: MSMg01no170_f12.g1 PHD_FILE: MSMg01no170_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,432,441 - 69,432,706)(69,317,712 - 69,317,995)
sequence
TTTTTTTTTCCTTTTCTTCTTTTATCCTTTTACCCCCGCNGTTAAGCTTG
NNNNGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACCCATAACAAGAGCTAAGAGTCCCAGAGTGGGCT
GACAGATGACAGGAGCAATGACCAGGTCTTCTGGTGGTCTGTGAATCAAT
CCAGACCAGAACTGATGACACATGGTGCCAACTGTAGTAATTCGATACCA
GCAAAAGAGATTCAAGGATAATGTTAGTGGCCCAGATAGGAGAAATGAGG
TTCCCAACCCCCTTGTCAAGATTCTCTTCTTGGGCAGTGCCTGGAGCTCC
CTGGTACAATGCTTGCCTAGAATGTTCTTAACTGTAAGTAAAATCTATCT
ACCTACCTACCTATCGATTANCTCCNTATCTATNCCCCTATCTATCTATC
TATCTATCTATCTATCTATCTATTTATACAATAATATGTCTATCTATCTG
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCT
ATCTACTGCCTGCCTGTCTGTCTGTCTTAATCAGGGCTTCTATTCCTGCA
CAAATATCATGACCATGGAGCAAGTCAGGGAGGAAAGGTTTTATTCAGCT
TATACTTCCTCTCTGCTGTTTCTCTCCCATTGAAGCTCGGACCGTACATT
TCTCTGGTCTGGACGCATGAGCTGATGCATAATCCCCGTATGGCCGCTTC
TTATTGTCCTGCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGACAGTTGGGCTCCAAAGTC
TTGTGCGCAGCAGTTCTGCTATGCAATCTTCTCTTTAAAAATAAGAAATT
CCGGTTTCACAAAAGACTGACACAATGGCCCAAGAAATGAATTGTCAATA
ATACAAATACGAGTGACCAGGAAAAGGAATAGCAAGCCCCTTCTCAGTAG
ATGAAGCCACCACCTTGGAAAGGACATGAGAAGAGAGGTGACAATAAAGA
CAGTCCTGACATGGAACACTTGTTGCTTTCCAGGCTTTGATCTAGATGAT
ATACCCACTCTTTTTTATGCCCCCGNCCCCACAGAAGACTGCTCTCCTCT
ACAGCTTTACAGTAGGCGTTGTTTTCCTGTGATCTTTACTATGGGAGCCA
CGAACCACGTGGGCCTGAGTGTAGCTAACGCTACTGATAATTGTTGCCCC
TATTTAATTTCAACCTTAGCGATTGGGTTCATTAGATAGTTTCATACTTC
TGGTGGCCCCCAAATGGAGGATGCAGGAGCAAGTGGTGTTTTCCAGGTTA
GACACAAGAAGATGGAGGGGAAGCACAGCCGGTCATCCTATAAGATCATG
TAGTTTTTTAGTGGCGAACCCGCTGTTCCAATGCATACAGCCTGGTTCTG
GAACACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f12.b1 MSMg01no170_f12.b1 CHROMAT_FILE:
MSMg01no170_f12.b1 PHD_FILE: MSMg01no170_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:16 2005
         (271 letters)



>mm_chr18_69432237_69432907
          Length = 671

 Score =  453 bits (234), Expect = e-132
 Identities = 258/266 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacccataacaagagctaagagtcccagagtgggctgacagatgacaggagcaa 64
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcaatccataacaagaactaagagtcccagagtgggctgacagatgacaggagcaa 411

                                                                       
Query: 65  tgaccaggtcttctggtggtctgtgaatcaatccagaccagaactgatgacacatggtgc 124
           ||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 410 tgaccaggtcttccgatgatctgtgaatcaatccagaccagagctgatgacacatggtgc 351

                                                                       
Query: 125 caactgtagtaattcgataccagcaaaagagattcaaggataatgttagtggcccagata 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 350 caactgtagtaattcgataccagcaaaagagattcaaggataatgttagtagcccagaca 291

                                                                       
Query: 185 ggagaaatgaggttcccaacccccttgtcaagattctcttcttgggcagtgcctggagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggagaaatgaggttcccaacccccttgtcaagattctcttcttgggcagtgcctggagct 231

                                     
Query: 245 ccctggtacaatgcttgcctagaatg 270
           ||||||||||||||||||||||||||
Sbjct: 230 ccctggtacaatgcttgcctagaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no170_f12.g1 MSMg01no170_f12.g1 CHROMAT_FILE:
MSMg01no170_f12.g1 PHD_FILE: MSMg01no170_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:16 2005
         (286 letters)



>mm_chr18_69317512_69318197
          Length = 686

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagacagttgggctccaaagtcttgtgcgcagcagttctgctatgcaatcttctcttt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaggcagttgggctccaaagtcttgtgcgcagcagttctgctatgcaatcttctcttt 260

                                                                       
Query: 61  aaaaataagaaattccggtttcacaaaagactgacacaatggcccaagaaatgaattgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaataagaaattccggtttcacaaaagactgacacaatggcccaagaaatgaattgtc 320

                                                                       
Query: 121 aataatacaaatacgagtgaccaggaaaaggaatagcaagccccttctcagtagatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataatacaaatacgagtgaccaggaaaaggaatagcaagccccttctcagtagatgaag 380

                                                                       
Query: 181 ccaccaccttggaaaggacatgagaagagaggtgacaataaagacagtcctgacatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccaccttggaaaggacatgagaagagaggtgacaataaagacagtcctgacatggaa 440

                                                       
Query: 241 cacttgttgctttccaggctttgatctagatgatatacccactc 284
           |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cacttggtgctttccaggccttgatctagatgatatacccactc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)