BAC Information

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BAC

Clone NameMSMg01-170G18
Chromosome18 (Build37)
Map Location 80,499,011 - 80,499,290
singlet/doubletsinglet
Overlap geneKcng2
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1
Downstream geneD330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170G18.T7 (MSMg01no170_g18.b1)MSMg01-170G18.TJ (MSMg01no170_g18.g1)
ACCAG366992AG366993
length741752
length of high quality
(start - end)
64 (258 - 321)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no170_g18.b1 PHD_FILE: MSMg01no170_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:22 2005CHROMAT_FILE: MSMg01no170_g18.g1 PHD_FILE: MSMg01no170_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGAGCGGCGGA
ANNCACANCCTCTTACCAGAAAGAAAGGGACNNCNGCAAAGGGGGGNCCC
AGTTCCCAAGNCACCACTGGNNCCCCCGNCNCCCAACACAGCAGGGAGGG
AGNGGNCNCCACTTNNAATNCCGNANAAANNNCNAANNCAGACNGGNGAA
NCGGNNAACAAAAGGNNCGGCNCNACAAAGNGANCNCAAGGGGANCCAGA
ACATTTTAAGCTAAAAAATGTGATAAAGAATGGGACACAGACTTCACATT
AAGTCTATTAATAAGCATATTTTTTTTCTTAGCACGGGNANAANCCCAGG
AAGCNAAAGCATTTTTTTTTTTCCCCANACCAAACCCGANNANANAGNAA
GGNCCGGNCNCCAAAAACCACAGGAAGACCNGACCGAAACAGCCGGGGGC
AGGAGAAGGCAAGAGAAGCAGCNAACCCGGCAAACACGGGACACAACCGA
GGGNCCANCAAACGGCACAGGACACAAGCGAAGGCNCNGGGNACAGAGAA
AGCAACGCCGGCGGACAACCAAAGGGAGCNGACCCAAACAAAACACGCCC
CGCGAAAAGCGGNNGGAGGGAGAGNNCNNCGGCCACCNCANCACAGGAAC
GGNCTAACNAGACCAAGGCCACAGGCGAACGACAGAACAGGAGACGCNCG
NCGGGAGGCCAGGGAGGGAACAGACCGACCGNCCAGAGGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAGGTCAGAGAGGTTGGACAGTGA
TGGGCTGCTTTGGAAATATATCTTTGCAGAGTTTATGTCGTTACATGTTT
TGTCCAGCAGTCTAGACCTCACCTGGACTGCCCTGCTCTAAAACCTTAGC
CTCAGATCCAGCTGGCCCATGTGTAACAGGGAATGGGTAGGCTAAGGAAA
CAACTCAGACGTTTCTAATAACAGGGGAACTGTGTGTCCTGTAAAGCCAC
AGCTCACACCCAGCAACCCTAGAGAAAGAACCCTTAGTGTGTGGACACAG
GCCATGTCCTGCTTGTTAGCTTTTTTAAGTTGTTTTGTTGGGGGGTGGNN
CATTTTCNGNTTTGAAAAAAAAAACAAAAACCTGTCCCCGCGCGGCCTCT
CTCCCCTCCCTTTTCCTTTCCCAAATTTTTCTCCCCCCCCCGCTTCCTTT
TTTTTTTTTTCCCTCCCTTCCCCTTTCTTCCCCCTCTTTCCTTTCCCCCC
CCACCCCCCCCCCCCTTTTTTCTTCTTTCCCCCCCCTTTTCCCCTCCTTC
CCACCTCACCCCCCGCGTGTTTCTTCTTTCTTTTTTTTACTCCACCTTCC
TTTCTCCACTCCTTTATTTTCTCCATCCTCCGCTCCCGACCCCCCACACC
CCTCTCTCCCATTCACCCTCCCACTACTCTCCTCACCCCCCCCTTCTTCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_g18.g1 MSMg01no170_g18.g1 CHROMAT_FILE:
MSMg01no170_g18.g1 PHD_FILE: MSMg01no170_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:22 2005
         (282 letters)



>mm_chr18_80498810_80499491
          Length = 682

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   caggtcagagaggttggacagtgatgggctgctttggaaatatatctttgcagagtttat 61
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caggtcaaagaggttggacagtgatgggctgctttggaaatatatctttgcagagtttat 422

                                                                       
Query: 62  gtcgttacatgttttgtccagcagtctagacctcacctggactgccctgctctaaaacct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgttacatgttttgtccagcagtctagacctcacctggactgccctgctctaaaacct 362

                                                                       
Query: 122 tagcctcagatccagctggcccatgtgtaacagggaatgggtaggctaaggaaacaactc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagcctcagatccagctggcccatgtgtaacagggaatgggtaggctaaggaaacaactc 302

                                                                       
Query: 182 agacgtttctaataacaggggaactgtgtgtcctgtaaagccacagctcacacccagcaa 241
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 agacgtttctaataacaggggaactgtgtgtcctgtcaagccacagctcacacccagcaa 242

                                                   
Query: 242 ccctagagaaagaacccttagtgtgtggacacaggccatg 281
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccctagagaaagaacccttagtgtgtggacacaggccatg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)